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Report for CCDS25555.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25555.1 Public Mus musculus 11 Icam2 23 108 98 CCDS HistoryNCBI Gene:15896Re-query CCDS DB by CCDS ID:25555.1Re-query CCDS DB by GeneID:15896See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25555.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001055.14 ENSMUSP00000001055.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001055.14Link to Ensembl Protein Viewer:ENSMUSP00000001055.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000001055Re-query CCDS DB by Protein ID:ENSMUSP00000001055
Original member Current member NCBI NM_010494.2 NP_034624.1 Accepted alive Link to Nucleotide Sequence:NM_010494.2Link to Protein Sequence:NP_034624.1Re-query CCDS DB by Nucleotide ID:NM_010494Re-query CCDS DB by Protein ID:NP_034624Link to BLAST:NP_034624.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034624.1 277 P35330 277 100% 0 0

Chromosomal Locations for CCDS 25555.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 106377807 106377994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106378646 106378963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106380667 106380939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106382430 106382484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (834 nt):
ATGTCTTCTTTTGCTTGCTGGAGCCTGTCTCTTCTTATCCTGTTCTACAGCCCAGGGTCTGGTGAGAAGG
CCTTTGAGGTCTACATATGGTCCGAGAAGCAGATAGTAGAAGCCACAGAGTCTTGGAAAATCAACTGCAG
CACCAACTGCGCAGCCCCAGACATGGGCGGCCTGGAGACGCCCACGAATAAAATAATGTTGGAAGAGCAT
CCTCAAGGGAAGTGGAAACAGTTCTTAGTCTCAAACGTCTCCAAAGACACGGTCTTCTTTTGCCATTTCA
CGTGTTCGGGAAAGCAGCACTCGGAGAGTCTCAACATCAGGGTGTACCAGCCTCCAGCTCAAGTCACACT
GAAGCTGCAGCCGCCTCGGGTGTTTGTGGGTGAAGACTTCACCATTGAGTGCACGGTGTCCCCTGTGCAG
CCCCTTGAGAGGCTCACCCTCTCTCTGCTCCGTGGCAGAGAGACCCTGAAGAATCAGACCTTTGGGGGAG
CAGAAACTGTCCCCCAAGAGGCCACAGCCACGTTCAACAGCACAGCTCTGAAAAAGGACGGTCTCAACTT
TTCCTGCCAGGCTGAGCTGGATCTACGGCCCCATGGTGGGTATATCATCCGCAGCATCTCGGAGTACCAG
ATCCTTGAAGTCTATGAGCCGATGCAGGACAACCAAATGGTCATCATCATCGTGGTGGTGTCAATACTGC
TGTTCTTATTTGTGACATCTGTCCTGCTATGCTTTATCTTTGGCCAGCACTGGCACAGAAGACGGACAGG
CACCTACGGGGTGCTAGCTGCCTGGAGGAGGCTGCCCCGAGCCTTTCGGGCACGTCCCGTGTGA

Translation (277 aa):
MSSFACWSLSLLILFYSPGSGEKAFEVYIWSEKQIVEATESWKINCSTNCAAPDMGGLETPTNKIMLEEH
PQGKWKQFLVSNVSKDTVFFCHFTCSGKQHSESLNIRVYQPPAQVTLKLQPPRVFVGEDFTIECTVSPVQ
PLERLTLSLLRGRETLKNQTFGGAETVPQEATATFNSTALKKDGLNFSCQAELDLRPHGGYIIRSISEYQ
ILEVYEPMQDNQMVIIIVVVSILLFLFVTSVLLCFIFGQHWHRRRTGTYGVLAAWRRLPRAFRARPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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