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Report for CCDS15365.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15365.1 Public Mus musculus 1 Rgl1 23 108 98 CCDS HistoryNCBI Gene:19731Re-query CCDS DB by CCDS ID:15365.1Re-query CCDS DB by GeneID:19731See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15365.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027760.13 ENSMUSP00000027760.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027760.13Link to Ensembl Protein Viewer:ENSMUSP00000027760.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027760Re-query CCDS DB by Protein ID:ENSMUSP00000027760
Original member NCBI NM_016846.4 NP_058542.2 Updated not alive Link to Nucleotide Sequence:NM_016846.4Link to Protein Sequence:NP_058542.2Re-query CCDS DB by Nucleotide ID:NM_016846Re-query CCDS DB by Protein ID:NP_058542
Current member NCBI NM_016846.5 NP_058542.2 Accepted alive Link to Nucleotide Sequence:NM_016846.5Link to Protein Sequence:NP_058542.2Re-query CCDS DB by Nucleotide ID:NM_016846Re-query CCDS DB by Protein ID:NP_058542Link to BLAST:NP_058542.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058542.2 768 Q60695 768 100% 0 0

Chromosomal Locations for CCDS 15365.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 152519009 152519196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152521295 152521409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152524645 152524899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152528273 152528459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152531506 152531595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152533506 152533627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152536267 152536299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152537731 152537817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152539937 152540026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152544351 152544435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152549067 152549170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152552421 152552636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152554296 152554420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152557403 152557587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152571598 152571675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152586407 152586615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152623818 152623928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152624984 152625010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2307 nt):
ATGAAATTACTTTGGCAAGCTAAAATGAGCTCGATTCAGGACTGGGGTGAAGAGGTAGAGGAAGGAGCTG
TTTACCATGTCACCCTCAAAAGAGTCCAGATTCAACAGGCGGCCAATAAAGGAGCGAGATGGCTAGGGGT
TGAAGGGGACCAGCTGCCTCCAGGACACACAGTCAGTCAGTACGAGACCTGCAAGATCAGGACCATCAAA
GCTGGTACGCTGGAGAAGCTTGTGGAGAACCTGCTGACGGCTTTTGGGGACAATGACTTTACCTACATCA
GCATCTTTTTGTCGACATACAGAGGCTTTGCCTCGACTAAGGAAGTGCTGGAGCTGCTGCTGGACAGGTA
TGGAAACCTGACAGGCCCAAACTGTGAAGACGATGGAAGCCAAAGTTCACCCGAGTCCAAGGCCGTGATC
CGGAATGCCATTGCTTCCATCCTGAGGGCCTGGCTTGACCAGTGTGCGGAAGACTTCCGGGAGCCCCCTC
ACTTCCCTTGCCTTCAGAAGCTGCTGGAGTACCTCAAACAGATGATGCCTGGCTCTGACCCAGAGAGGAG
AGCACAGAACCTTCTTGAACAGTTTCAAAAGCAGGACGTGGATTCCGACAATGGACTTCTCAACACCAGC
TCCTTCAGCCTGGAAGAGGAAGAGGAACTGGAGAGCGGAGGGTCAGCAGAATTCACGAACTTCTCAGAAG
ATCTCGTGGCAGAACAGCTGACCTACATGGACGCACAACTATTCAAGAAGGTAGTGCCTCACCATTGCCT
GGGCTGTATTTGGTCTCAGCGGGATAAAAAGGAAAACAAGCATTTGGCTCCTACGATCCGTGCCACCATC
TCTCAGTTTAATACGCTCACCAAGTGTGTTGTCAGCACCGTCCTGGGGAGCAAGGAACTCAAAACTCAGC
AGCGAGCCAGAGTCATCGAGAAGTGGATCAACATTGCTCACGAATGTAGAATCCTGAAGAATTTTTCCTC
CTTGAGGGCCATCGTTTCCGCACTGCAGTCTAATTCCATCTATCGGTTGAAAAAGGCTTGGGCTGCTGTC
CCGAAGGACAGAATGCTGATGTTTGAAGAACTTTCAGATATCTTCTCTGATCACAATAACCATCTAACCA
GTCGGGAGCTACTAATGAAGGAAGGAACTTCAAAATTTGCAAACCTGGACAGCAGCGTGAAAGAAAACCA
GAAGCGGACCCAGAGGCGCCTGCAACTGCAGAAGGATATGGGTGTGATGCAGGGTACCGTGCCTTACCTG
GGCACCTTCCTGACTGACCTGACCATGCTGGACACTGCCCTGCAGGACTACATTGAGGGTGGACTGATCA
ACTTCGAGAAAAGAAGAAGGGAATTTGAAGTCATTGCCCAGATAAAGCTCCTACAGTCTGCTTGCAACAG
CTACTGCATGGGCCCAGACCAGAAGTTTATCCAGTGGTTCCAGAGGCAGCAGCTTCTATCAGAGGAGGAA
AGCTACGCCCTCTCGTGTGAGATTGAAGCCGCTGCCGACGCCAACACCACTTCCCCTAAGCCTCGGAAAA
GCATGGTGAAGAGGCTGAGCCTGCTATTTCTGGGGTCTGACATCATCCCCGGGAGCACTCCCACCAAAGA
GCAGCCCAAGTCCGCAGCCAGTGGGAGCTCTGGGGAGAGTATGGACTCAGTCAGTGTGTCGTCCTGTGAA
TCAAACCACTCCGAGGCTGAGGAGGGCCCCGTCACACCCATGGACACACCAGATGAGCCCCAAAAGAAGC
TCTCTGAATCCTCCTCTTCCTGTTCCTCCATCCATTCCATGGACACGAATTCCTCAGGGATGTCGTCCCT
AATCAACCCCCTGTCCTCCCCTCCAACGTGCAACAACAATCCTAAAATCCACAAGCGCTCCGTCTCCGTG
ACATCCATTACCTCCACAGTACTGCCTCCTGTTTACAATCAGCAGAACGAAGACACCTGCATCATCCGCA
TCAGTGTAGAAGACAACAATGGCAACATGTACAAGAGCATCATGCTGACAAGCCAGGATAAGACCCCCGC
TGTGATCCAGAGAGCGATGTCGAAGCACAACCTGGAGTCGGACCCCGCCGAGGAGTATGAGCTGGTGCAG
GTCATCTCGGAGGACAAAGAACTAGTGATCCCGGACTCTGCAAACGTCTTTTACGCCATGAATAGCCAAG
TGAACTTTGATTTCATTTTACGCAAAAAGAACTCGGTGGAGGAGCAGGTGAAGTTGCGCAGTCGGACCAG
CCTGACTTTGCCCAGGACAGCTAAGCGGGGCTGCTGGAGTAACAGGCACAGCAAGATCACCCTCTGA

Translation (768 aa):
MKLLWQAKMSSIQDWGEEVEEGAVYHVTLKRVQIQQAANKGARWLGVEGDQLPPGHTVSQYETCKIRTIK
AGTLEKLVENLLTAFGDNDFTYISIFLSTYRGFASTKEVLELLLDRYGNLTGPNCEDDGSQSSPESKAVI
RNAIASILRAWLDQCAEDFREPPHFPCLQKLLEYLKQMMPGSDPERRAQNLLEQFQKQDVDSDNGLLNTS
SFSLEEEEELESGGSAEFTNFSEDLVAEQLTYMDAQLFKKVVPHHCLGCIWSQRDKKENKHLAPTIRATI
SQFNTLTKCVVSTVLGSKELKTQQRARVIEKWINIAHECRILKNFSSLRAIVSALQSNSIYRLKKAWAAV
PKDRMLMFEELSDIFSDHNNHLTSRELLMKEGTSKFANLDSSVKENQKRTQRRLQLQKDMGVMQGTVPYL
GTFLTDLTMLDTALQDYIEGGLINFEKRRREFEVIAQIKLLQSACNSYCMGPDQKFIQWFQRQQLLSEEE
SYALSCEIEAAADANTTSPKPRKSMVKRLSLLFLGSDIIPGSTPTKEQPKSAASGSSGESMDSVSVSSCE
SNHSEAEEGPVTPMDTPDEPQKKLSESSSSCSSIHSMDTNSSGMSSLINPLSSPPTCNNNPKIHKRSVSV
TSITSTVLPPVYNQQNEDTCIIRISVEDNNGNMYKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYELVQ
VISEDKELVIPDSANVFYAMNSQVNFDFILRKKNSVEEQVKLRSRTSLTLPRTAKRGCWSNRHSKITL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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