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Report for CCDS15159.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15159.1 Public Mus musculus 1 Scly 23 108 98 CCDS HistoryNCBI Gene:50880Re-query CCDS DB by CCDS ID:15159.1Re-query CCDS DB by GeneID:50880See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15159.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027532.12 ENSMUSP00000027532.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027532.12Link to Ensembl Protein Viewer:ENSMUSP00000027532.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027532Re-query CCDS DB by Protein ID:ENSMUSP00000027532
Original member NCBI NM_016717.3 NP_057926.2 Updated not alive Link to Nucleotide Sequence:NM_016717.3Link to Protein Sequence:NP_057926.2Re-query CCDS DB by Nucleotide ID:NM_016717Re-query CCDS DB by Protein ID:NP_057926
Current member NCBI NM_016717.4 NP_057926.2 Accepted alive Link to Nucleotide Sequence:NM_016717.4Link to Protein Sequence:NP_057926.2Re-query CCDS DB by Nucleotide ID:NM_016717Re-query CCDS DB by Protein ID:NP_057926Link to BLAST:NP_057926.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057926.2 432 Q9JLI6-1 432 99.7685% 0 1

Chromosomal Locations for CCDS 15159.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 91298396 91298448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91300528 91300640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91302769 91302869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91305274 91305454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91308314 91308441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91308651 91308815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91309797 91309903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91315489 91315525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91317064 91317147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91317592 91317691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91319038 91319113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91320077 91320230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGGACGCGGCGCGAAATGGCGCGCTGGGCAGTGTGGAGAGCCTACCCGACAGGAAGGTCTATATGGACT
AT
AATGCCACCACACCTCTAGAGCCCGAAGTCATCCAGGCTGTGACAGAGGCCATGAAGGAAGCCTGGGG
A
AACCCCAGCAGCTCCTATGTGTCAGGTAGGAAGGCCAAGGACATTATAAATGCAGCTCGAGCGAGCCTG
GCC
AAGATGATAGGTGGAAAGCCCCAGGACATCATCTTCACTTCTGGGGGCACCGAGTCAAATAATTTAG
TA
ATCCACTCTATGGTAAGATGCTTCCATGAACAGCAGACCCTGAAGGGGAACATGGTTGACCAGCACAG
C
CCAGAAGAGGGGACCAGGCCCCATTTTATCACTTGCACAGTGGAACACGACTCCATCCGGCTGCCCCTG
GAG
CACCTGGTGGAAAATCAAATGGCAGAGGTCACTTTTGTCCCAGTGTCGAAGGTGAATGGGCAGGCAG
AG
GTCGAGGATATCCTGGCGGCTGTCCGTCCCACCACATGCCTTGTGACCATCATGCTGGCCAATAATGA
G
ACCGGCGTCATCATGCCTGTCTCCGAGATCAGTCGGCGAATTAAAGCCCTGAACCAGATCCGGGCTGCC
TCG
GGGCTGCCCCGAGTCCTGGTGCACACAGACGCTGCTCAGGCACTGGGGAAGAGGCGAGTGGATGTCG
AA
GACCTGGGCGTGGACTTCCTGACCATCGTGGGACATAAGTTCTACGGCCCCAGGATCGGTGCTCTGTA
T
GTACGAGGGGTCGGTAAACTTACCCCCCTGTACCCCATGCTGTTTGGAGGTGGACAAGAGTGGAATTTC
AGG
CCAGGGACCGAGAACACGCCCATGATTGCTGGCCTTGGGAAGGCTGCTGATCTGGTGAGCGAGAACT
GC
GAGACTTATGAGGCCCACATGAGAGACATCCGAGATTACCTGGAGGAGAGGCTGGAGGCTGAGTTTGG
T
AAGAGAATCCATTTGAACAGCCGGTTTCCAGGAGTGGAGAGGCTTCCAAACACCTGCAACTTTTCCATC
CAG
GGGTCCCAGCTTCAAGGGTACACGGTCCTTGCACAGTGCCGGACACTGCTGGCCAGTGTGGGAGCAT
CA
TGCCACTCAAATCACGAGGACCGGCCATCCCCAGTGCTGCTGAGCTGCGGCATTCCTGTGGACGTGGC
C
CGGAATGCAGTCCGGCTCAGCGTGGGCCGCGGTACCACCAGGGCTGATGTGGATCTCATCGTACAGGAC
CTG
AAGCAGGCCGTGGCCCAACTGGAAGGGCGGCTCTAG


Translation (432 aa):
MDAARNGALGSVESLPDRKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSSSYVSGRKAKDIINAARASL
A
KMIGGKPQDIIFTSGGTE
SNNLVIHSMVRCFHEQQTLKGNMVDQHSPEEGTRPHFITCTVEHDSIRLPL
E
HLVENQMA
EVTFVPVSKVNGQAEVEDILAAVRPTTCLVTIMLANNETGVIMPVSEISRRIKALNQIRAA
S
GLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHK
FYGPRIGALYVRGVGKLTPLYPMLFGGGQEWNF
R
P
GTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSI
Q
GSQLQ
GYTVLAQCRTLLASVGASCHSNHEDRPSPVLLSCGIPVDVARNAVRLSVGRGTTRADVDLIVQD
L
KQAVAQLEGRL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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