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Report for CCDS25284.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25284.1 Public Mus musculus 11 Gngt2 23 108 98 CCDS HistoryNCBI Gene:14710Re-query CCDS DB by CCDS ID:25284.1Re-query CCDS DB by GeneID:14710See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25284.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036088.10 ENSMUSP00000047586.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036088.10Link to Ensembl Protein Viewer:ENSMUSP00000047586.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000036088Re-query CCDS DB by Protein ID:ENSMUSP00000047586
Original member Current member EBI ENSMUST00000100532.9 ENSMUSP00000098101.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100532.9Link to Ensembl Protein Viewer:ENSMUSP00000098101.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100532Re-query CCDS DB by Protein ID:ENSMUSP00000098101
Original member Current member EBI ENSMUST00000107708.1 ENSMUSP00000103336.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107708.1Link to Ensembl Protein Viewer:ENSMUSP00000103336.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107708Re-query CCDS DB by Protein ID:ENSMUSP00000103336
Original member Current member EBI ENSMUST00000107709.7 ENSMUSP00000103337.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107709.7Link to Ensembl Protein Viewer:ENSMUSP00000103337.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107709Re-query CCDS DB by Protein ID:ENSMUSP00000103337
Original member Current member EBI ENSMUST00000107711.7 ENSMUSP00000103339.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107711.7Link to Ensembl Protein Viewer:ENSMUSP00000103339.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107711Re-query CCDS DB by Protein ID:ENSMUSP00000103339
Original member Current member EBI ENSMUST00000107712.7 ENSMUSP00000103340.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107712.7Link to Ensembl Protein Viewer:ENSMUSP00000103340.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107712Re-query CCDS DB by Protein ID:ENSMUSP00000103340
Original member Current member EBI ENSMUST00000107714.8 ENSMUSP00000103342.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107714.8Link to Ensembl Protein Viewer:ENSMUSP00000103342.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107714Re-query CCDS DB by Protein ID:ENSMUSP00000103342
Original member Current member NCBI NM_001038664.2 NP_001033753.2 Accepted alive Link to Nucleotide Sequence:NM_001038664.2Link to Protein Sequence:NP_001033753.2Re-query CCDS DB by Nucleotide ID:NM_001038664Re-query CCDS DB by Protein ID:NP_001033753Link to BLAST:NP_001033753.2
Original member Current member NCBI NM_001284393.1 NP_001271322.1 Accepted alive Link to Nucleotide Sequence:NM_001284393.1Link to Protein Sequence:NP_001271322.1Re-query CCDS DB by Nucleotide ID:NM_001284393Re-query CCDS DB by Protein ID:NP_001271322Link to BLAST:NP_001271322.1
Original member Current member NCBI NM_001284397.1 NP_001271326.1 Accepted alive Link to Nucleotide Sequence:NM_001284397.1Link to Protein Sequence:NP_001271326.1Re-query CCDS DB by Nucleotide ID:NM_001284397Re-query CCDS DB by Protein ID:NP_001271326Link to BLAST:NP_001271326.1
Original member Current member NCBI NM_023121.2 NP_075610.1 Accepted alive Link to Nucleotide Sequence:NM_023121.2Link to Protein Sequence:NP_075610.1Re-query CCDS DB by Nucleotide ID:NM_023121Re-query CCDS DB by Protein ID:NP_075610Link to BLAST:NP_075610.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033753.2 69 Q61017 69 100% 0 0
NP_001271322.1 69 Q61017 69 100% 0 0
NP_001271326.1 69 Q61017 69 100% 0 0
NP_075610.1 69 Q61017 69 100% 0 0

Chromosomal Locations for CCDS 25284.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 95845057 95845140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95845483 95845608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (210 nt):
ATGGCCCAGGACCTCAGTGAGAAGGAGCTGTTGAGGATGGAGGTGGAGCAGCTGAAGAAGGAAGTGAAGA
ACCCACGTGATCTGATTTCCAAGACAGGAAAGGAAATCAAGGATTATGTAGAGGCCCAAGCAGGGACAGA
CCCTCTTCTCAAAGGCATCCCAGAAGACAAGAATCCCTTCAAGGAGAAAGGCACTTGTGTGCTAAGCTGA

Translation (69 aa):
MAQDLSEKELLRMEVEQLKKEVKNPRDLISKTGKEIKDYVEAQAGTDPLLKGIPEDKNPFKEKGTCVLS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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