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Report for CCDS24637.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24637.1 Public Mus musculus 11 Zfp354c 23 108 98 CCDS HistoryNCBI Gene:30944Re-query CCDS DB by CCDS ID:24637.1Re-query CCDS DB by GeneID:30944See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24637.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000632.6 ENSMUSP00000000632.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000632.6Link to Ensembl Protein Viewer:ENSMUSP00000000632.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000000632Re-query CCDS DB by Protein ID:ENSMUSP00000000632
Original member Current member EBI ENSMUST00000109135.8 ENSMUSP00000104763.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109135.8Link to Ensembl Protein Viewer:ENSMUSP00000104763.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109135Re-query CCDS DB by Protein ID:ENSMUSP00000104763
Original member Current member NCBI NM_013922.4 NP_038950.3 Accepted alive Link to Nucleotide Sequence:NM_013922.4Link to Protein Sequence:NP_038950.3Re-query CCDS DB by Nucleotide ID:NM_013922Re-query CCDS DB by Protein ID:NP_038950Link to BLAST:NP_038950.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038950.3 560 Q571J5 560 100% 0 0

Chromosomal Locations for CCDS 24637.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 50814564 50815993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50817119 50817211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50817809 50817935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50826426 50826458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1683 nt):
ATGGCTGTGGATTTGCTGGCTGCCCGAGGCACAGAGCCTGTGACCTTCAGGGATGTGGCCGTGTCCTTCA
GCCAGGATGAGTGGTTGCACCTGGACCCTGCTCAGAGAAGCCTGTACCGAGAGGTGATGCTGGAGAACTA
CAGCAACCTGGCCTCGCTGGGGTTTCAGGCTTCAATACCTCCTGTGATTGGCAAGCTGCAAAAAGGGCAA
GATCCCTGCATGGAAAGAGAAGCCCCTGAAGACACCTGCCTAGATTTCGAGATTTGGCCAGAGATAGAAG
CATTGCCACCCAAACAAGATGTTCTTACTAAAGAGACATCACATGGGCTGATAAAGAATGGATCCACTAA
GTGTGTTTACTGGAAAATCAGCTTTGGAGAGCTTGTGAAAACTGAGTGCCGAGATATAGCACAGGAGCAA
GAAAAGAAAGTGCATGGGCCAGGGGCAGAGTCACCCAAGGAAACCACCAGTGAAGACGGAACTCCCACGG
GCTTCGAGCCGGAGAAACCCTTGTTCATTAGTAAAGCACTTGTCTCACAAGAGGGTGATCCTACAGAAAG
TGTTCCTGCTACGTATCACACTTCAGAGAAAGATTTACCACAGGATTTTGATCTAATGAGAAGCTTTCAA
ATGTACCCAGGACAAAAACCTCATGTCTGCAGTGAATGTGGCAAGGGTTTCACCCAAAGCCTTCATCTTC
TAGAGCACAAGAGGCTTCACACTGGGGAGAAGCCGTACAAATGCAGCGAGTGTGGGAAGAGCTTCAGCCA
TAGATCCTCCCTCCTGGCTCACCAGAGAACCCACACCGGAGAGAAGCCGTACAAGTGCAGCGAGTGTGAG
AAAGCCTTCGGCAGCAGCTCCACTCTCATCAAACACCTGAGGGTGCACACCGGAGAGAAACCTTACCGCT
GCCGGCAGTGTGGGAAGGCCTTCAGCCAGTGTTCCACCCTCACTGTACACCAGAGGATTCACACTGGGGA
AAAGCTCTATAAATGTGCCGAGTGTGACAAGGCCTTTAACTGCAGAGCAAAGCTCCACAGACATCAGAGA
ATCCACACAGGGGAGAAGCCATATAAATGTGCTGAGTGTGGGAAGGGCTACAGTCAGTTTCCATCCCTAG
CCGAACACCAGAGACTCCATACTGGCGAGCAGCTTTGCCAGTGTTTGCAATGTGGGAGAACCTTTACACG
TGTGTCTACCCTTATCGAACACCAGAGAATTCATACTGGACAGAAACCATATCAATGCAACGAATGTGGG
AAGACTTTCAACCAGTATTCCTCCTTCAATGAACATCGGAAGATTCATACCGGGGAGAAACTTTACACAT
GTGAAGAATGTGGGAAAGCCTTTGGCTGTAAATCAAACCTTTATCGGCATCAGAGGATCCATACTGGAGA
GAAACCCTATCAGTGTAACCAGTGTGGAAAGGCCTTCAGCCAGTATTCATTCCTAACTGAACACGAGCGA
ATCCATACTGGAGAGAAGCTCTACAAGTGTATGGAGTGTGGGAAAGCCTATAGTTACAGGTCAAACCTTT
GTAGACACAAAAAAGTCCACCTTAAGGAAAGGCTGTATAAATGGAAAGAATATGGGACACCCTTTATCTA
TGGCTCATCCCTTACTCCATATCAGAAATTTCTGAAAGGAGACAAGCCTGAGAACTTTAATTCATCGCTG
TGA

Translation (560 aa):
MAVDLLAARGTEPVTFRDVAVSFSQDEWLHLDPAQRSLYREVMLENYSNLASLGFQASIPPVIGKLQKGQ
DPCMEREAPEDTCLDFEIWPEIEALPPKQDVLTKETSHGLIKNGSTKCVYWKISFGELVKTECRDIAQEQ
EKKVHGPGAESPKETTSEDGTPTGFEPEKPLFISKALVSQEGDPTESVPATYHTSEKDLPQDFDLMRSFQ
MYPGQKPHVCSECGKGFTQSLHLLEHKRLHTGEKPYKCSECGKSFSHRSSLLAHQRTHTGEKPYKCSECE
KAFGSSSTLIKHLRVHTGEKPYRCRQCGKAFSQCSTLTVHQRIHTGEKLYKCAECDKAFNCRAKLHRHQR
IHTGEKPYKCAECGKGYSQFPSLAEHQRLHTGEQLCQCLQCGRTFTRVSTLIEHQRIHTGQKPYQCNECG
KTFNQYSSFNEHRKIHTGEKLYTCEECGKAFGCKSNLYRHQRIHTGEKPYQCNQCGKAFSQYSFLTEHER
IHTGEKLYKCMECGKAYSYRSNLCRHKKVHLKERLYKWKEYGTPFIYGSSLTPYQKFLKGDKPENFNSSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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