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Report for CCDS51655.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51655.1 Public Mus musculus 5 Asl 23 108 98 CCDS HistoryNCBI Gene:109900Re-query CCDS DB by CCDS ID:51655.1Re-query CCDS DB by GeneID:109900See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51655.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159619.7 ENSMUSP00000123799.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159619.7Link to Ensembl Protein Viewer:ENSMUSP00000123799.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159619Re-query CCDS DB by Protein ID:ENSMUSP00000123799
Original member Current member EBI ENSMUST00000161094.7 ENSMUSP00000124274.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161094.7Link to Ensembl Protein Viewer:ENSMUSP00000124274.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161094Re-query CCDS DB by Protein ID:ENSMUSP00000124274
Original member Current member EBI ENSMUST00000160129.7 ENSMUSP00000124579.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160129.7Link to Ensembl Protein Viewer:ENSMUSP00000124579.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160129Re-query CCDS DB by Protein ID:ENSMUSP00000124579
Original member Current member NCBI NM_133768.5 NP_598529.1 Accepted alive Link to Nucleotide Sequence:NM_133768.5Link to Protein Sequence:NP_598529.1Re-query CCDS DB by Nucleotide ID:NM_133768Re-query CCDS DB by Protein ID:NP_598529Link to BLAST:NP_598529.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598529.1 464 Q91YI0 464 100% 0 0

Chromosomal Locations for CCDS 51655.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 130011556 130011700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130011865 130011971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130012050 130012130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130012657 130012740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130012997 130013056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130013169 130013253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130013401 130013515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130013963 130014025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130014679 130014731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130016097 130016174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130016296 130016373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130018310 130018407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130018548 130018604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130018833 130018916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130019662 130019856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130024042 130024053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGGCATCAGAGAGCGGGAAGCTATGGGGTGGCCGGTTTGTGGGTGCTGTCGACCCCATCATGGAGAAGT
TCAACTCATCTATCTCCTATGACCGGCATCTGTGGAATGTGGATGTGCAGGGGAGCAAGGCCTACAGCAG
GGGCCTGGAGAAGGCGGGGCTTCTCACCAAAGCCGAGATGCAGCAGATACTGCAAGGGTTGGACAAGGTT
GCTGAAGAGTGGGCCCAAGGCACCTTCAAATTACATCCTAATGATGAAGACATCCACACAGCCAACGAGC
GGCGCCTGAAGGAACTCATCGGTGAAGCTGCAGGGAAGCTACACACAGGACGAAGTCGCAACGACCAGGT
GGTCACGGACCTCAGGCTGTGGATGAGGCAGACCTGCTCAAAACTCTCCGCCCTCCTCCGGGTGCTCATT
GGAACCATGGTCGACCGGGCAGAGGCGGAACGTGATGTCCTCTTCCCAGGGTACACACACTTGCAGAGAG
CTCAGCCCATTCGCTGGAGCCACTGGATCCTGAGCCACGCTGTTGCGCTGACACGAGATTCAGAGAGACT
CTTGGAGGTGCAGAAGCGGATCAATGTCTTGCCACTGGGGAGTGGGGCCATTGCAGGCAACCCTCTGGGT
GTGGACCGGGAGCTACTCCGTGCAGAACTGAACTTTGGGGCCATCACTCTCAACAGCATGGATGCCACCA
GTGAGAGAGACTTTGTGGCTGAGTTCCTGTTTTGGGCTTCTCTGTGTATGACCCACCTCAGCAGGATGGC
AGAGGACCTAATTCTCTATGGTACCAAGGAATTCAGCTTTGTGCAACTCTCAGATGCCTACAGCACCGGA
AGCAGCTTGATGCCCCAGAAGAAAAACCCAGACAGCCTGGAGCTGATCCGGAGCAAGGCGGGCCGAGTGT
TTGGACGGTGTGCCGGACTCCTGATGACCCTCAAGGGACTTCCAAGCACCTACAACAAGGACTTACAGGA
AGACAAGGAGGCTGTGTTTGAAGTGTCTGACACCATGATAGCTGTCCTCCAAGTGGCCACTGGAGTCATC
TCTACATTGCAGATTCATCGTGAGAACATGAAACAGGCGCTCAGCCCTGACATGCTGGCCACGGACCTCG
CCTACTACCTGGTCCGCAAAGGGATGCCATTCCGCCAGGCCCACGAGGCCTCAGGGAAAGCTGTGTTCAT
GGCAGAGACTAAAGGAGTGGCTCTCAACCTGCTGTCGCTACAGGAGCTGCAGACCATCAGTCCCCTGTTC
TCAGGTGATGTGAGTCACGTGTGGGACTACAGTCACAGCGTGGAACAGTACAGTGCCTTGGGTGGCACAG
CGAAATCCAGTGTCGAATGGCAGATCAGGCAGGTGCGGGCCCTACTGCAAGCCCAGGAGCCCTAG

Translation (464 aa):
MASESGKLWGGRFVGAVDPIMEKFNSSISYDRHLWNVDVQGSKAYSRGLEKAGLLTKAEMQQILQGLDKV
AEEWAQGTFKLHPNDEDIHTANERRLKELIGEAAGKLHTGRSRNDQVVTDLRLWMRQTCSKLSALLRVLI
GTMVDRAEAERDVLFPGYTHLQRAQPIRWSHWILSHAVALTRDSERLLEVQKRINVLPLGSGAIAGNPLG
VDRELLRAELNFGAITLNSMDATSERDFVAEFLFWASLCMTHLSRMAEDLILYGTKEFSFVQLSDAYSTG
SSLMPQKKNPDSLELIRSKAGRVFGRCAGLLMTLKGLPSTYNKDLQEDKEAVFEVSDTMIAVLQVATGVI
STLQIHRENMKQALSPDMLATDLAYYLVRKGMPFRQAHEASGKAVFMAETKGVALNLLSLQELQTISPLF
SGDVSHVWDYSHSVEQYSALGGTAKSSVEWQIRQVRALLQAQEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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