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Report for CCDS22804.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22804.1 Public Mus musculus 9 Mmp12 23 108 98 CCDS HistoryNCBI Gene:17381Re-query CCDS DB by CCDS ID:22804.1Re-query CCDS DB by GeneID:17381See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22804.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005950.11 ENSMUSP00000005950.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005950.11Link to Ensembl Protein Viewer:ENSMUSP00000005950.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000005950Re-query CCDS DB by Protein ID:ENSMUSP00000005950
Original member Current member NCBI NM_008605.3 NP_032631.3 Accepted alive Link to Nucleotide Sequence:NM_008605.3Link to Protein Sequence:NP_032631.3Re-query CCDS DB by Nucleotide ID:NM_008605Re-query CCDS DB by Protein ID:NP_032631Link to BLAST:NP_032631.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032631.3 473 P34960 473 100% 0 0

Chromosomal Locations for CCDS 22804.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 7347425 7347538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7348585 7348832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7349723 7349871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7350012 7350137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7352888 7353049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7353446 7353569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7354722 7354855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7355312 7355471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7357805 7357908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7358227 7358327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGAGCTGCACTCTGCTGAAAGGAGTCTGCACAATGAAATTTCTCATGATGATTGTGTTCTTACAGGTAT
CTGCCTGTGGGGCTGCTCCCATGAATGACAGTGAATTTGCTGAATGGTACTTGTCAAGATTTTATGATTA
TGGAAAGGACAGAATTCCAATGACAAAAACAAAAACCAATAGAAACTTCCTAAAAGAAAAACTCCAGGAA
ATGCAGCAGTTCTTTGGGCTAGAAGCAACTGGGCAACTGGACAACTCAACTCTGGCAATAATGCACATCC
CTCGATGTGGAGTGCCCGATGTACAGCATCTTAGAGCAGTGCCCCAGAGGTCAAGATGGATGAAGCGGTA
CCTCACTTACAGGATCTATAATTACACTCCGGACATGAAGCGTGAGGATGTAGACTACATATTTCAGAAA
GCTTTCCAAGTCTGGAGTGATGTGACTCCTCTAAGATTCAGAAAGCTTCATAAAGATGAGGCTGACATTA
TGATACTTTTTGCATTTGGAGCTCACGGAGACTTCAACTATTTTGATGGCAAAGGTGGTACACTAGCCCA
TGCTTTTTATCCTGGACCTGGTATTCAAGGAGATGCACATTTTGATGAGGCAGAAACGTGGACTAAAAGT
TTTCAAGGCACAAACCTCTTCCTTGTTGCTGTTCATGAACTTGGCCATTCCTTGGGGCTGCAGCATTCCA
ATAATCCAAAGTCAATAATGTACCCCACCTACAGATACCTTAACCCCAGCACATTTCGCCTCTCTGCTGA
TGACATACGTAACATTCAGTCCCTCTATGGAGCCCCAGTGAAACCCCCATCCTTGACAAAACCTAGCAGT
CCACCATCAACTTTCTGTCACCAAAGCTTGAGTTTTGATGCTGTCACAACAGTGGGAGAGAAAATCTTTT
TCTTTAAAGACTGGTTCTTCTGGTGGAAGCTTCCTGGGAGTCCAGCCACCAACATTACTTCTATTTCTTC
CATATGGCCAAGCATCCCATCTGGTATTCAAGCTGCTTACGAAATTGAAAGCAGAAATCAACTTTTCCTT
TTTAAAGATGAGAAGTACTGGTTAATAAACAACTTAGTACCAGAGCCACACTATCCCAGGAGCATATATT
CCCTGGGCTTCTCTGCATCTGTGAAGAAGGTTGATGCAGCTGTCTTTGACCCACTTCGCCAAAAGGTTTA
TTTCTTTGTGGATAAACACTACTGGAGGTATGATGTGAGGCAGGAGCTCATGGACCCTGCTTACCCCAAG
CTGATTTCCACACACTTCCCAGGAATCAAGCCTAAAATTGATGCAGTCCTCTATTTCAAAAGACACTACT
ACATCTTCCAAGGAGCCTATCAATTGGAATATGACCCCCTGTTCCGTCGTGTCACCAAAACATTGAAAAG
TACAAGCTGGTTTGGTTGTTAG

Translation (473 aa):
MSCTLLKGVCTMKFLMMIVFLQVSACGAAPMNDSEFAEWYLSRFYDYGKDRIPMTKTKTNRNFLKEKLQE
MQQFFGLEATGQLDNSTLAIMHIPRCGVPDVQHLRAVPQRSRWMKRYLTYRIYNYTPDMKREDVDYIFQK
AFQVWSDVTPLRFRKLHKDEADIMILFAFGAHGDFNYFDGKGGTLAHAFYPGPGIQGDAHFDEAETWTKS
FQGTNLFLVAVHELGHSLGLQHSNNPKSIMYPTYRYLNPSTFRLSADDIRNIQSLYGAPVKPPSLTKPSS
PPSTFCHQSLSFDAVTTVGEKIFFFKDWFFWWKLPGSPATNITSISSIWPSIPSGIQAAYEIESRNQLFL
FKDEKYWLINNLVPEPHYPRSIYSLGFSASVKKVDAAVFDPLRQKVYFFVDKHYWRYDVRQELMDPAYPK
LISTHFPGIKPKIDAVLYFKRHYYIFQGAYQLEYDPLFRRVTKTLKSTSWFGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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