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Report for CCDS41150.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41150.1 Public Mus musculus X Tsc22d3 23 108 98 CCDS HistoryNCBI Gene:14605Re-query CCDS DB by CCDS ID:41150.1Re-query CCDS DB by GeneID:14605See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41150.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112996.8 ENSMUSP00000108620.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112996.8Link to Ensembl Protein Viewer:ENSMUSP00000108620.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112996Re-query CCDS DB by Protein ID:ENSMUSP00000108620
Original member Current member NCBI NM_001077364.1 NP_001070832.1 Accepted alive Link to Nucleotide Sequence:NM_001077364.1Link to Protein Sequence:NP_001070832.1Re-query CCDS DB by Nucleotide ID:NM_001077364Re-query CCDS DB by Protein ID:NP_001070832Link to BLAST:NP_001070832.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070832.1 201 Q9Z2S7-3 201 100% 0 0

Chromosomal Locations for CCDS 41150.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 140540868 140541107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 140542105 140542156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 140598128 140598441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGGCCCAGCCCAAGACCGAGTGCCGCTCACCTGTTGGCCTCGACTGCTGCAACTGCTGCCTCGACCTGG
CC
AACCGCTGCGAGCTCCAGAAGGAGAAGAGCGGGGAGAGCCCGGGCAGCCCCTTCGTGAGCAACTTTCG
G
CAGCTGCAGGAGAAGCTCGTCTTCGAGAACCTCAACACTGACAAGCTGAACAACATAATGCGCCAGGAT
TCC
ATGGAGCCCGTGGTGCGCGACCCCTGCTACCTGATCAATGAGGGCATCTGCAACCGCAACATAGACC
AG
ACCATGCTCTCCATTCTACTTTTCTTCCACAGTGCCTCCGGAGCCAGTGTGGTGGCCCTAGACAACAA
G
ATTGAGCAGGCCATGGACCTCGTGAAGAACCACCTGATGTACGCTGTGAGAGAGGAGGTGGAGGTCCTA
AAG
GAGCAGATTCGTGAGCTGCTTGAGAAGAACTCCCAGCTGGAGCGCGAGAACACCCTCCTGAAGACGC
TG
GCAAGCCCCGAGCAACTGGAAAAGTTCCAGTCCCGGCTGAGCCCTGAAGAGCCAGCACCTGAAGCCCC
A
GAAACCCCGGAAACCCCGGAAGCCCCTGGTGGTTCTGCGGTGTAA


Translation (201 aa):
MAQPKTECRSPVGLDCCNCCLDLANRCELQKEKSGESPGSPFVSNFRQLQEKLVFENLNTDKLNNIMRQD
S
MEPVVRDPCYLINEGICNRNIDQTMLSILLFFH
SASGASVVALDNKIEQAMDLVKNHLMYAVREEVEVL
K
EQIRELLEKNSQLERENTLLKTLASPEQLEKFQSRLSPEEPAPEAPETPETPEAPGGSAV




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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