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Report for CCDS36242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36242.1 Public Mus musculus 11 Myo1d 23 108 98 CCDS HistoryNCBI Gene:338367Re-query CCDS DB by CCDS ID:36242.1Re-query CCDS DB by GeneID:338367See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36242.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041065.13 ENSMUSP00000037819.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041065.13Link to Ensembl Protein Viewer:ENSMUSP00000037819.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041065Re-query CCDS DB by Protein ID:ENSMUSP00000037819
Original member Current member NCBI NM_177390.3 NP_796364.2 Accepted alive Link to Nucleotide Sequence:NM_177390.3Link to Protein Sequence:NP_796364.2Re-query CCDS DB by Nucleotide ID:NM_177390Re-query CCDS DB by Protein ID:NP_796364Link to BLAST:NP_796364.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796364.2 1006 Q5SYD0-1 1006 100% 0 0

Chromosomal Locations for CCDS 36242.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 80484226 80484382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80557434 80557588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80586847 80586960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80592787 80592891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80593739 80593883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80601583 80601806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80637874 80638081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80640219 80640385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80657393 80657525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80663041 80663115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80666575 80666645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80670849 80671019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80674614 80674728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80674817 80674962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80676051 80676254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80676822 80676938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80680020 80680115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80682382 80682435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80684325 80684490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80685850 80685943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80692881 80693089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80779698 80779792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3021 nt):
ATGGCGGAGCAGGAGAGCCTTGAGTTCGGCAAGGCGGACTTCGTGCTGATGGACACCGTCTCCATGCCCG
AGTTCATGGCCAACCTTAGGCTCAGATTTGAGAAAGGACGCATCTACACATTCATCGGAGAAGTGGTTGT
TTCTGTGAATCCATACAAGGTGCTGAACATCTATGGGAGGGACACTGTCGAGCAGTATAAAGGTCGTGAG
CTTTATGAGAGACCTCCTCATCTCTTTGCTATTGCTGACGCTGCTTACAAGGCCATGAAGAGGCGATCAA
AAGACACCTGTATTATGATATCAGGGGAAAGTGGAGCTGGTAAAACAGAGGCCAGTAAGTACATCATGCA
GTATATCGCCGCCATCACCAACCCCAGCCAGAGAGCAGAGATAGAAAGAGTGAAGAATATGTTGCTGAAG
TCAAACTGCGTTTTGGAAGCTTTTGGAAATGCCAAAACCAATCGTAATGACAATTCCAGCAGGTTTGGGA
AATACATGGATATCAACTTTGACTTCAAGGGAGACCCCATTGGGGGACATATTAATAACTACTTGCTGGA
AAAGTCTCGTGTGATTGTGCAGCAGCCTGGAGAACGGAGCTTCCATTCTTTCTATCAGCTCCTCCAGGGA
GGTTCTGAGCAGATGCTGCACTCTCTTCACCTGCAGAAGTCACTCTCATCCTACAACTACATCCGTGTGG
GGGCACAGCTGAAGTCTTCCATCAATGACGCTGCTGAGTTCAAAGTTGTAGCTGATGCCATGAAAGTAAT
TGGATTCAAACCTGAGGAGATTCAAACTGTGTATAAAATTTTGGCTGTTATTCTTCACTTGGGAAATTTA
AAATTTATAGTAGATGGTGACACGCCGCTTATTGAGAATGGCAAGGTTGTGTCTGTCATAGCAGAATTGC
TGTCTACTAAGGCAGACATGGTGGAGAAAGCCCTGCTTTACCGGACGGTGGCCACAGGCCGTGACATCAT
CGACAAACAGCACACGGAACAGGAGGCCAGCTACGGCAGAGACGCCTTTGCCAAGGCAATATATGAGCGC
CTCTTTTGTTGGATTGTTACTCGCATCAATGACATCATCGAGGTCAAGAACTATGACACCACGATACATG
GGAAAAACACGGTTATTGGTGTCTTGGATATCTATGGCTTTGAAATCTTTGACAACAACAGCTTTGAGCA
GTTCTGCATTAACTACTGCAACGAGAAACTGCAGCAGCTCTTCATTCAGCTGGTGCTGAAGCAGGAGCAA
GAGGAGTACCAGCGGGAGGGCATCCCTTGGAAACACATTGATTACTTCAACAACCAGATCATTGTGGACC
TCGTGGAGCAGCAGCACAAAGGCATCATTGCAATCCTGGATGACGCGTGTATGAATGTTGGCAAAGTCAC
TGACGGAATGTTCCTTGAGGCCCTTAACAGTAAATTGGGCAAACATGGTCATTTTTCCAGCCGAAAGACC
TGTGCCTCAGACAAAATCCTGGAGTTTGATCGGGACTTTCGAATCCGTCATTATGCGGGTGACGTGGTCT
ATTCTGCCATCGGTTTTATCGACAAAAATAAAGATACTTTATTTCAAGATTTCAAGCGCCTTATGTATAA
CAGCTCAAATCCTGTGCTGAAGAATATGTGGCCCGAAGGCAAGCTCAGCATTACAGAGGTGACCAAGAGG
CCTCTGACCGCTGCCACCTTGTTTAAGAATTCTATGATTGCTTTAGTAGACAACCTTGCTTCAAAGGAGC
CGTACTATGTGCGTTGCATCAAACCCAATGACAAGAAGTCCCCACAGATATTTGACGATGAGCGCTGCCG
CCATCAGGTAGAATACCTGGGGCTGCTGGAGAATGTGAGAGTGCGCCGGGCAGGGTTTGCCTTCCGCCAG
ACCTACGAGAAGTTTCTTCACAGGTACAAGATGATCTCTGAGTTCACCTGGCCTAACCATGACCTTCCTT
CAGACAAAGAGGCTGTCAAGAAACTCATAGAGCGATGTGGCTTTCAGGATGACGTAGCTTATGGGAAGAG
CAAAATTTTCATTCGAACACCCCGTACACTGTTCACCCTGGAAGAACTTCGTGCCCAGATGCTCGTCAGG
GTTGTCCTCTTCCTACAAAAGGTGTGGCGTGGCACCCTGGCCCGCATGCGGTACAAGAGGACCAAGGCAG
CTCTGACAATAATCAGGTACTACAGGCGCTATAAAGTGAAGTCGTACATCCACGAGGTGGCCAGACGATT
CCACGGTGTCAAGAACATGAGGGACTATGGGAAGCATGTGAAGTGGCCAACCCCACCAAAAGTCCTGCGG
CGTTTCGAGGAGGCCCTGCAGTCGATTTTTAATAGATGGAGAGCATCCCAACTCATCAAGACCATACCTG
CATCAGACCTTCCCCAGGTCAGGGCAAAGGTTGCAGCCATGGAGATGCTGAAAGGTCAAAGGGCAGACCT
TGGACTCCAGAGAGCCTGGGAAGGCAACTATCTTGCTTCGAAGCCAGACACACCTCAGACCTCAGGCACT
TTCGTCCCAGTTGCTAATGAGCTGAAACGCAAGGACAAGTATATGAACGTTCTCTTTTCCTGTCACGTCC
GGAAGGTGAATCGGTTTAGTAAGGTAGAAGACCGAGCAATTTTTGTCACTGACCGTCACCTGTATAAAAT
GGACCCCACTAAGCAGTACAAGGTGATGAAGACTATCCCACTGTACAACTTGACTGGTCTGAGTGTCTCC
AATGGAAAGGACCAACTTGTAGTGTTCCATACAAAAGACAACAAAGACCTCATTGTCTGCCTCTTCAGCA
AACAGCCAACCCATGAGAGTCGTATTGGAGAACTTGTTGGAGTCCTGGTGAATCATTTCAAGAGTGAGAA
GCGCCACCTTCAAGTGAACGTCACCAACCCGGTGCAGTGCAGCCTGCACGGGAAGAAATGCACCGTCTCT
GTGGAGACCCGGCTCAATCAGCCACAGCCTGACTTCACCAAGAACCGCTCGGGCTTCATCCTCAGTGTGC
CCGGGAACTGA

Translation (1006 aa):
MAEQESLEFGKADFVLMDTVSMPEFMANLRLRFEKGRIYTFIGEVVVSVNPYKVLNIYGRDTVEQYKGRE
LYERPPHLFAIADAAYKAMKRRSKDTCIMISGESGAGKTEASKYIMQYIAAITNPSQRAEIERVKNMLLK
SNCVLEAFGNAKTNRNDNSSRFGKYMDINFDFKGDPIGGHINNYLLEKSRVIVQQPGERSFHSFYQLLQG
GSEQMLHSLHLQKSLSSYNYIRVGAQLKSSINDAAEFKVVADAMKVIGFKPEEIQTVYKILAVILHLGNL
KFIVDGDTPLIENGKVVSVIAELLSTKADMVEKALLYRTVATGRDIIDKQHTEQEASYGRDAFAKAIYER
LFCWIVTRINDIIEVKNYDTTIHGKNTVIGVLDIYGFEIFDNNSFEQFCINYCNEKLQQLFIQLVLKQEQ
EEYQREGIPWKHIDYFNNQIIVDLVEQQHKGIIAILDDACMNVGKVTDGMFLEALNSKLGKHGHFSSRKT
CASDKILEFDRDFRIRHYAGDVVYSAIGFIDKNKDTLFQDFKRLMYNSSNPVLKNMWPEGKLSITEVTKR
PLTAATLFKNSMIALVDNLASKEPYYVRCIKPNDKKSPQIFDDERCRHQVEYLGLLENVRVRRAGFAFRQ
TYEKFLHRYKMISEFTWPNHDLPSDKEAVKKLIERCGFQDDVAYGKSKIFIRTPRTLFTLEELRAQMLVR
VVLFLQKVWRGTLARMRYKRTKAALTIIRYYRRYKVKSYIHEVARRFHGVKNMRDYGKHVKWPTPPKVLR
RFEEALQSIFNRWRASQLIKTIPASDLPQVRAKVAAMEMLKGQRADLGLQRAWEGNYLASKPDTPQTSGT
FVPVANELKRKDKYMNVLFSCHVRKVNRFSKVEDRAIFVTDRHLYKMDPTKQYKVMKTIPLYNLTGLSVS
NGKDQLVVFHTKDNKDLIVCLFSKQPTHESRIGELVGVLVNHFKSEKRHLQVNVTNPVQCSLHGKKCTVS
VETRLNQPQPDFTKNRSGFILSVPGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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