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Report for CCDS28642.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28642.1 Public Mus musculus 17 Psmb9 23 108 98 CCDS HistoryNCBI Gene:16912Re-query CCDS DB by CCDS ID:28642.1Re-query CCDS DB by GeneID:16912See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28642.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000174576.3 ENSMUSP00000133499.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174576.3Link to Ensembl Protein Viewer:ENSMUSP00000133499.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174576Re-query CCDS DB by Protein ID:ENSMUSP00000133499
Original member NCBI NM_013585.2 NP_038613.1 Updated not alive Link to Nucleotide Sequence:NM_013585.2Link to Protein Sequence:NP_038613.1Re-query CCDS DB by Nucleotide ID:NM_013585Re-query CCDS DB by Protein ID:NP_038613
Current member NCBI NM_013585.3 NP_038613.1 Accepted alive Link to Nucleotide Sequence:NM_013585.3Link to Protein Sequence:NP_038613.1Re-query CCDS DB by Nucleotide ID:NM_013585Re-query CCDS DB by Protein ID:NP_038613Link to BLAST:NP_038613.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038613.1 219 P28076 219 98.6301% 0 3

Chromosomal Locations for CCDS 28642.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34182224 34182351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34183089 34183230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34183615 34183744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34184282 34184413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34185730 34185797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34187250 34187309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGCTGCGGGCAGGAGCACCTACCGCCGGCTCGTTCCGGACGGAAGAAGTCCACACCGGGACAACCATCA
TGGCAGTGGAGTTTGACGGGGGTGTCGTGGTGGGCTCTGATTCCCGGGTGTCAGCGGGAACAGCAGTGGT
GAACCGCGTGTTCGACAAGCTCTCCCCTCTGCACCAGCACATCTTCTGTGCCCTCTCAGGTTCCGCTGCT
GATGCCCAAGCCATAGCTGACATGGCCGCCTACCAGCTGGAGCTACACGGGTTGGAGCTGGAGGAGCCGC
CCCTCGTTCTGGCTGCTGCAAACGTGGTGAAGAACATCTCCTACAAGTACCGTGAGGACTTGTTAGCGCA
TCTCATAGTAGCTGGCTGGGACCAATGTGAGGGGGGACAGGTATATGGAACCATGGGAGGGATGCTAATT
CGACAGCCCTTTACCATCGGCGGTTCCGGAAGCTCCTACATTTATGGTTATGTGGACGCAGCTTATAAGC
CAGGCATGACCCCTGAGGAGTGCCGGCGTTTCACCACAGATGCCATCACTCTGGCCATGAACCGAGATGG
CTCTAGTGGGGGTGTCATCTACCTGGTCACCATCACAGCTGCTGGTGTGGACCATCGAGTCATCCTGGGA
GATGAGCTGCCAAAATTCTACGATGAGTGA

Translation (219 aa):
MLRAGAPTAGSFRTEEVHTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQHIFCALSGSAA
DAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQCEGGQVYGTMGGMLI
RQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTDAITLAMNRDGSSGGVIYLVTITAAGVDHRVILG
DELPKFYDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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