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Report for CCDS37548.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37548.1 Public Mus musculus 17 Slc37a1 23 108 98 CCDS HistoryNCBI Gene:224674Re-query CCDS DB by CCDS ID:37548.1Re-query CCDS DB by GeneID:224674See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37548.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171233.8 ENSMUSP00000126111.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171233.8Link to Ensembl Protein Viewer:ENSMUSP00000126111.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171233Re-query CCDS DB by Protein ID:ENSMUSP00000126111
Original member Current member EBI ENSMUST00000165149.2 ENSMUSP00000128223.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165149.2Link to Ensembl Protein Viewer:ENSMUSP00000128223.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165149Re-query CCDS DB by Protein ID:ENSMUSP00000128223
Original member Current member NCBI NM_001242427.1 NP_001229356.1 Accepted alive Link to Nucleotide Sequence:NM_001242427.1Link to Protein Sequence:NP_001229356.1Re-query CCDS DB by Nucleotide ID:NM_001242427Re-query CCDS DB by Protein ID:NP_001229356Link to BLAST:NP_001229356.1
Original member Current member NCBI NM_153062.2 NP_694702.1 Accepted alive Link to Nucleotide Sequence:NM_153062.2Link to Protein Sequence:NP_694702.1Re-query CCDS DB by Nucleotide ID:NM_153062Re-query CCDS DB by Protein ID:NP_694702Link to BLAST:NP_694702.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229356.1 531 Q8R070 531 100% 0 0
NP_694702.1 531 Q8R070 531 100% 0 0

Chromosomal Locations for CCDS 37548.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 31300452 31300507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31307280 31307361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31315494 31315626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31316141 31316219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31319055 31319190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31321048 31321124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31322099 31322265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31325666 31325703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31328149 31328229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31333572 31333697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31335734 31335824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31337370 31337432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31337991 31338076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31338943 31338991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31340212 31340285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31340934 31341012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31346410 31346507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31349355 31349419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31349782 31349797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1596 nt):
ATGGCTCTGCTTCCCGTGGGCATCCGCTTCATCATCTCCTTCTCCAGGGATCAGTGGTACCGGGCTTTCA
TTTTTATGCTGACCTTTCTGCTCTATGCAAGCTTCCACTTATCCCGAAAGCCTATCAGCATAGTGAAGGG
CGAGCTTCACAAGCAGTGTACTGCAGGAGATGGGCCTGAGTCTCCATTCAGTGACCCTAGCAGCAGCACC
AGGCATGGCCCCACCCACTGGCTCCTGAACAATGAGACCGACTGTGGCTGGGCCCCCTTCGATAAGAACA
ATTACCAGCAGCTGCTTGGAGCCCTGGACTACGCCTTCCTGTGCGCCTATGCCATTGGAATGTACCTGAG
TGGAATAATAGGGGAACGCCTGCCGATTAGGTATTACCTGACTTTCGGGATGCTGGCCAGCGGCGCCTTC
ACAGCCCTGTTCGGCTTGGGCTATTTCTACAACATCCACAGCCTGGGATTCTACGTGGTGACCCAGATCA
TTAATGGACTGGTGCAGACCACAGGCTGGCCCAGCGTTGTCACCTGCCTCAGCAACTGGTTTGGAAAAGG
AAGGCGTGGCCTGATCATGGGGATTTGGAACTCCCACACCTCCGTGGGCAACATTCTGGGGTCCTTGATT
GCCGGCTACTGGGTGTCTACGTGCTGGGGCCTGTCATTTATCGTGCCTGGGGCCATCGTGGCAGCCATGG
GGATAGTGTGCTTTCTCTTTCTCATCGAACACCCTAAGGACGTCAAGTGCTCCTCCACCCTCCCCACGCA
CCCTAGAGCCTCTGAGAATGGCATAAACAGATTTAGACTGCAGAAGCAAACCACGTACAGTGAAAAGAAT
GGACCTCTGGACCCAGAGCTTCAGTGCTTGCTACTCTCCGACGGGAAGAACCCCCTTCACCCAAGCCATA
TTGTTGTCCTCCCTGCTGATGGCAACATGGCCGCCATCAGCTTCACGGGAGCCCTGAGGATCCCGGGCGT
GATTGAGTTTTCTCTGTGTTTGCTGTTTGCCAAGCTGGTCAGCTACACATTCCTGTTCTGGCTCCCGCTG
TACATCACCAGTGTAGATCACCTGGATGCCAAGAAAGCTGGGGAGCTGTCCACATTGTTTGACGTGGGCG
GGATCTTTGGTGGGATTCTAGCAGGCGTGATCTCCGACCGTCTGGAGAAACGAGCCTCCACTTGTGGTCT
GATGCTATTGCTGGCAGCACCCACGCTCTATGTCTTCTCCTCCGTCAGCAGAATGGGCCTAGAAGCCACC
ATAGCCATGTTGCTCCTCAGTGGGGCCCTGGTGAGCGGGCCCTACGCACTGATCACCACTGCCGTCTCTG
CAGACTTGGGGACTCACAAGAGTCTGAAAGGGAACTCCCACGCCCTGTCCACCGTGACAGCCATCATCGA
CGGCACTGGGTCTGTAGGAGCTGCCTTGGGGCCCCTGCTGGCAGGGCTCATCTCCCCCTCTGGATGGAGC
AACGTGTTCTACATGCTGATGTTTGCAGATGCCTGTGCCTTACTGTTCCTGGTCCGCCTCATACACAAGG
AGTTGAGCTGTCCAGGCCCAGCCGCAGGGATCCAGGCTCCGCTGAAGGAACACTGA

Translation (531 aa):
MALLPVGIRFIISFSRDQWYRAFIFMLTFLLYASFHLSRKPISIVKGELHKQCTAGDGPESPFSDPSSST
RHGPTHWLLNNETDCGWAPFDKNNYQQLLGALDYAFLCAYAIGMYLSGIIGERLPIRYYLTFGMLASGAF
TALFGLGYFYNIHSLGFYVVTQIINGLVQTTGWPSVVTCLSNWFGKGRRGLIMGIWNSHTSVGNILGSLI
AGYWVSTCWGLSFIVPGAIVAAMGIVCFLFLIEHPKDVKCSSTLPTHPRASENGINRFRLQKQTTYSEKN
GPLDPELQCLLLSDGKNPLHPSHIVVLPADGNMAAISFTGALRIPGVIEFSLCLLFAKLVSYTFLFWLPL
YITSVDHLDAKKAGELSTLFDVGGIFGGILAGVISDRLEKRASTCGLMLLLAAPTLYVFSSVSRMGLEAT
IAMLLLSGALVSGPYALITTAVSADLGTHKSLKGNSHALSTVTAIIDGTGSVGAALGPLLAGLISPSGWS
NVFYMLMFADACALLFLVRLIHKELSCPGPAAGIQAPLKEH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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