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Report for CCDS27497.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27497.1 Public Mus musculus 15 Sqle 23 108 98 CCDS HistoryNCBI Gene:20775Re-query CCDS DB by CCDS ID:27497.1Re-query CCDS DB by GeneID:20775See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27497.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022977.13 ENSMUSP00000022977.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022977.13Link to Ensembl Protein Viewer:ENSMUSP00000022977.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022977Re-query CCDS DB by Protein ID:ENSMUSP00000022977
Original member Current member NCBI NM_009270.3 NP_033296.1 Accepted alive Link to Nucleotide Sequence:NM_009270.3Link to Protein Sequence:NP_033296.1Re-query CCDS DB by Nucleotide ID:NM_009270Re-query CCDS DB by Protein ID:NP_033296Link to BLAST:NP_033296.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033296.1 572 P52019 572 100% 0 0

Chromosomal Locations for CCDS 27497.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 59315845 59316129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59317796 59318048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59321314 59321494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59322836 59322932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59323614 59323727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59323807 59323978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59324462 59324557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59326035 59326177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59326570 59326666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59329740 59329827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59330725 59330917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1719 nt):
ATGTGGACTTTTCTTGGCATTGCTACCTTCACCTATTTTTATAAGAAATGCGGGGATGTCACCCTGGCCA
ACAAGGAGCTCCTGCTGTGCGTGCTGGTGTTCCTGTCGCTGGGCCTGGTGCTCTCCTACCGCTGTCGCCA
TCGACACGGGGGCCTCCTTGGCCGCCATCAGAGCGGCGCCCAGTTCGCTGCCTTCTCGGATATTCTCTCT
GCTTTGCCTCTTATTGGCTTCTTCTGGGCCAAGTCACCTGAATCAGAAAAGAAAGAACAGCTGGAGTCCA
AGAAGTGCAGAAAAGAAATCGGTCTTTCAGAAACGACATTAACAGGAGCAGCTACCTCAGTGTCGACCTC
GTTCGTGACGGACCCGGAAGTGATCATCGTGGGATCTGGTGTGCTTGGATCTGCCTTGGCAGCAGTTCTC
TCCAGAGATGGAAGAAAGGTGACGGTCATCGAGAGAGATTTAAAAGAGCCCGACAGGATAGTTGGGGAGC
TGCTGCAGCCAGGAGGCTACCGTGTTCTCCAGGAGCTGGGCCTTGGAGATACAGTAGAAGGTCTCAATGC
CCATCATATACATGGCTACATAGTTCATGACTATGAAAGCAGATCTGAAGTTCAAATTCCGTACCCACTG
TCAGAAACCAACCAAGTGCAGAGTGGAATTGCTTTTCACCATGGCCGATTCATCATGAGTCTCCGGAAAG
CAGCTATGGCAGAGCCCAATGTAAAGTTTATAGAAGGTGTTGTGCTTCAGTTACTAGAGGAAGATGATGC
TGTAATCGGCGTGCAATACAAGGACAAGGAGACTGGGGACACCAAGGAGCTCCACGCCCCGCTCACCGTT
GTTGCGGATGGACTCTTCTCCAAGTTCAGGAAGAGCCTCATCTCCAGTAAAGTCTCCGTTTCTTCCCACT
TCGTTGGCTTCCTTATGAAGGATGCACCACAGTTTAAACCCAATTTTGCGGAGCTTGTTCTGGTCAACCC
CAGTCCAGTTCTCATCTACCAGATTTCTTCCAGTGAAACTAGGGTACTTGTTGATATTCGGGGAGAATTG
CCAAGAAACCTAAGAGAATACATGGCTGAACAAATTTACCCACAGTTACCTGAGCACCTGAAGGAGTCAT
TTCTGGAGGCCTCTCAGAATGGTCGTCTGCGGACCATGCCGGCCAGCTTCCTTCCTCCTTCCTCAGTGAA
CAAACGAGGCGTCCTTATTCTGGGAGATGCGTATAACCTGAGGCACCCTCTTACTGGTGGAGGAATGACA
GTTGCTTTAAAAGATATAAAATTGTGGAGACAACTGTTAAAAGACATTCCTGACCTTTATGATGATGCTG
CTATTTTCCAGGCCAAAAAATCATTCTTTTGGTCAAGAAAAAGGACCCATTCCTTTGTTGTGAATGTATT
GGCTCAGGCCTTGTATGAATTATTTTCAGCTACAGATGATTCCTTGCATCAGCTCCGAAAAGCTTGCTTT
CTGTATTTTAAACTTGGTGGAGAGTGTGTGACCGGTCCTGTTGGGTTGCTTTCAATATTGTCTCCTCACC
CTCTGGTGTTGATTCGACACTTCTTTTCCGTTGCAATCTACGCCACGTATTTCTGCTTCAAATCAGAGCC
GTGGGCTACAAAACCACGGGCCCTTTTCAGTAGCGGTGCTGTACTGTACAAAGCGTGTTCTATCCTATTT
CCACTCATCTATTCAGAAATGAAGTATCTGGTTCATTGA

Translation (572 aa):
MWTFLGIATFTYFYKKCGDVTLANKELLLCVLVFLSLGLVLSYRCRHRHGGLLGRHQSGAQFAAFSDILS
ALPLIGFFWAKSPESEKKEQLESKKCRKEIGLSETTLTGAATSVSTSFVTDPEVIIVGSGVLGSALAAVL
SRDGRKVTVIERDLKEPDRIVGELLQPGGYRVLQELGLGDTVEGLNAHHIHGYIVHDYESRSEVQIPYPL
SETNQVQSGIAFHHGRFIMSLRKAAMAEPNVKFIEGVVLQLLEEDDAVIGVQYKDKETGDTKELHAPLTV
VADGLFSKFRKSLISSKVSVSSHFVGFLMKDAPQFKPNFAELVLVNPSPVLIYQISSSETRVLVDIRGEL
PRNLREYMAEQIYPQLPEHLKESFLEASQNGRLRTMPASFLPPSSVNKRGVLILGDAYNLRHPLTGGGMT
VALKDIKLWRQLLKDIPDLYDDAAIFQAKKSFFWSRKRTHSFVVNVLAQALYELFSATDDSLHQLRKACF
LYFKLGGECVTGPVGLLSILSPHPLVLIRHFFSVAIYATYFCFKSEPWATKPRALFSSGAVLYKACSILF
PLIYSEMKYLVH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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