CCDS Report for Consensus CDS

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Report for CCDS56679.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
56679.1	Public	Mus musculus	10	Syne1	23	108	98

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56679.1

Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status
EBI	ENSMUST00000095899.4	ENSMUSP00000093587.3	Accepted	alive
NCBI	NM_022027.2	NP_071310.2	Updated	not alive
NCBI	NM_022027.3	NP_071310.2	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_071310.2	949	Q6ZWR6-3	949	100%	0	0

Chromosomal Locations for CCDS 56679.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)

Genome Browser links:

Chromosome	Start	Stop
10	5022007	5022247
10	5030376	5030434
10	5031766	5031858
10	5032917	5033129
10	5034933	5035061
10	5037216	5037416
10	5040764	5040975
10	5041461	5041584
10	5043611	5043753
10	5047531	5047858
10	5048724	5048915
10	5052275	5052412
10	5052656	5052838
10	5056377	5056527
10	5057780	5057967
10	5061389	5061551
10	5068807	5068898

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2850 nt):
ATGGTGGTGGCAGAGGACTTGCATGGCCCGAGGATGGCAGAGGACAGCAGTGTGGATGCAGATCTCCCAG ACTGCGACTGCGATGTCTCCAGGGTGAAGAAGCTAAAGGAGACGCTGGTTGCTGTGCAGCAGCTGGACAA GAACATGGGCAGCCTGAGGACTTGGCTGGCCCACATGGAGTCAGAGTTGGCCAAGCCCATAGTCTATGAT TCTTGTAACTCTGAAGAAATACAGAGGAAACTGAATGAGCAGCAGGAGCTCCAGAGAGACATCGAGAAAC ACAGCACAGGTGTCGCCTCCGTCCTCAACCTGTGTGAGGTTCTGCTGCATGACTGCGACGCCTGTGCCAC CGACGCAGAGTGTGACTCCATCCAGCAGGCCACTCGCAACCTGGACCGGCGGTGGAGGAACATCTGCGCC ATGTCCATGGAGAGGAGACTCAAAATTGAAGAGACGTGGCGACTGTGGCAGAAGTTTCTGGATGACTATT CTCGCTTTGAAGACTGGCTGGAGGTTTCAGAAAGGACGGCTGCTTTCCCCAGTTCTTCCGGGGTGCTCTA TACAGTTGCCAAGGAGGAGCTGAAGAAGTTTGAGGCTTTCCAGCGGCAGGTCCATGAGAGCCTGACCCAA CTAGAGCTTATCAACAAACAGTACCGGCGCCTGGCCAGAGAGAATCGCACAGACTCCGCCTGCAGCCTCA GGCAGATGGTCCATGGGGGCAACCAGAGATGGGACGACCTACAGAAGCGGGTCACCTCCATCTTGCGCAG GCTCAAGCACTTCATTAGCCAGCGTGAGGAGTTCGAGACTGCCCGGGACAGCATTCTTGTCTGGCTCACA GAGATGGATCTGCAGCTCACCAATATTGAACACTTTTCGGAATGTGACGTTCAAGCTAAAATAAAGCAAC TCAAGGCTTTCCAACAGGAGATCTCACTGAACCACAATAAAATCGAGCAGATCATTGCCCAGGGGGAGCA GCTGATAGAGAAGAGCGAGCCACTGGATGCCGCTGTCATCGAGGAGGAACTGGACGAGCTCAGACGCTAC TGCCAGGAGGTCTTTGGACGTGTGGAAAGATATCACAAGAAACTGATCCGCCTGCCTCTGCCAGATGACC ATGACCTCTCAGACCGAGAACTAGATCTCGAAGACTCCACGGCTCTTTCAGACCTCCGCTGGCAGGACCC GTCTGCAGATGGCATGCCCTCCCCACAGCCTTCTTCCAACCCCTCCCTCTCCCTTCCTCAGCCCCTCCGG AGTGAGCGGTCAGGGCGAGATACGCCGGCCAGCGTGGACTCCATCCCCCTGGAATGGGACCACGATTACG ACCTCAGTCGAGACCTAGAGTCAGCATCCCGAACTCTGCCCTCAGAAGATGAAGAAGGCGAGGAAGACAA GGAGTTCTACCTCAGGGGAGCTGTTGGCTTGTCAGGGGATCCCAGCTCACTGGAGTCACAGATGAGGCAA CTGGACAAAGCCCTGGATGACAGCCGCTTCCAGATACAGCAAACCGCAAATATCCTCAGAAGCAAAACCC CCACAGGGCCAGACCTGGACACCAGCTACAAGGGCTACATGAAGCTGCTGGGCGAGTGCAGTGGCAGCAT AGATTCCGTGAGGAGACTGGAGCACAAGCTGGCGGAGGAAGAGAGCTTTCCTGGCTTCGTTAACCTCAAC AGCACAGAGACTCAGACAGCTGGTGTAATTGACCGCTGGGAGCTCCTGCAGGCCCAGGCAATGAGCAAGG AGTTGAGGATGAAGCAGAACCTTCAGAAGTGGCAGCAGTTTAATTCTGACCTCAACAACATCTGGGCCTG GCTAGGAGAGACAGAGGAGGAGCTGGACAGGCTCCAGCACCTGGCGCTCAGCACTGACATCCACACCATC GAGTCTCACATCAAAAAGCTCAAGGAGCTCCAGAAAGCCGTGGACCACCGCAAAGCCATCATCCTCTCCA TCAACCTCTGCAGCTCTGAGTTCACCCAGGCTGACAGCAAAGAGAGTCATGACCTGCAGGATCGCTTATC CCAGATGAATGGGAGATGGGATCGAGTGTGCTCTCTGCTGGAGGACTGGAGAGGCTTGCTGCAGGATGCA CTGATGCAGTGCCAGGAGTTCCATGAAATGAGCCATGCCTTGCTTCTCATGCTAGAAAACATTGACAGAA GGAAAAATGAAATTGTCCCAATTGATTCAACCCTTGACCCAGAGACACTTCAGGACCATCACAAGCAACT CATGCAAATAAAGCAGGAGTTGCTGAAGTCCCAACTCAGAGTGGCCTCACTACAAGACATGTCTCGCCAA CTCTTGGTGAATGCTGAAGGTTCAGATTGTCTAGAAGCCAAAGAAAAGGTCCATGTGATTGGAAACCGGC TCAAACTTCTCCTGAAGGAGGTCAGCCATCATATCAAGGATCTTGAGAAGTTACTAGACATGTCAAGCAG TCAGCAGGATTTGTCATCATGGTCTTCTGCAGATGAGCTGGACACCTCAGGATCTGTGAGTCCCACATCC GGAAGAAGTACCCCAAACAGACAGAAATCGCCACGAGGCAAATGTAGTCTCTCACAGCCTGGACCCTCTG TCAGCAGCCCAAAGAGCAGGTCCACAAGAGATGGCTCCGATTCCTCCCGTTCTGACCCCAGGCCAGAACG GGTGGGTCGAGCCTTCCTGTTCCGGATCCTCCGGGCAGCTCTTCCCTTTCAGCTGCTCCTGCTGCTGCTT ATTGGACTCACCTGCCTTGTACCCATGTCAGAGAAAGACTACAGCTGTGCCCTCTCCAACAACTTTGCCC GATCCTTCCATCCGATGCTCAGATATACCAACGGTCCTCCTCCACTCTGA
Translation (949 aa):
MVVAEDLHGPRMAEDSSVDADLPDCDCDVSRVKKLKETLVAVQQLDKNMGSLRTWLAHMESELAKPIVYD SCNSEEIQRKLNEQQELQRDIEKHSTGVASVLNLCEVLLHDCDACATDAECDSIQQATRNLDRRWRNICA MSMERRLKIEETWRLWQKFLDDYSRFEDWLEVSERTAAFPSSSGVLYTVAKEELKKFEAFQRQVHESLTQ LELINKQYRRLARENRTDSACSLRQMVHGGNQRWDDLQKRVTSILRRLKHFISQREEFETARDSILVWLT EMDLQLTNIEHFSECDVQAKIKQLKAFQQEISLNHNKIEQIIAQGEQLIEKSEPLDAAVIEEELDELRRY CQEVFGRVERYHKKLIRLPLPDDHDLSDRELDLEDSTALSDLRWQDPSADGMPSPQPSSNPSLSLPQPLR SERSGRDTPASVDSIPLEWDHDYDLSRDLESASRTLPSEDEEGEEDKEFYLRGAVGLSGDPSSLESQMRQ LDKALDDSRFQIQQTANILRSKTPTGPDLDTSYKGYMKLLGECSGSIDSVRRLEHKLAEEESFPGFVNLN STETQTAGVIDRWELLQAQAMSKELRMKQNLQKWQQFNSDLNNIWAWLGETEEELDRLQHLALSTDIHTI ESHIKKLKELQKAVDHRKAIILSINLCSSEFTQADSKESHDLQDRLSQMNGRWDRVCSLLEDWRGLLQDA LMQCQEFHEMSHALLLMLENIDRRKNEIVPIDSTLDPETLQDHHKQLMQIKQELLKSQLRVASLQDMSRQ LLVNAEGSDCLEAKEKVHVIGNRLKLLLKEVSHHIKDLEKLLDMSSSQQDLSSWSSADELDTSGSVSPTS GRSTPNRQKSPRGKCSLSQPGPSVSSPKSRSTRDGSDSSRSDPRPERVGRAFLFRILRAALPFQLLLLLL IGLTCLVPMSEKDYSCALSNNFARSFHPMLRYTNGPPPL

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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