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Report for CCDS25070.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25070.1 Public Mus musculus 11 Gosr1 23 108 98 CCDS HistoryNCBI Gene:53334Re-query CCDS DB by CCDS ID:25070.1Re-query CCDS DB by GeneID:53334See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25070.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010536.8 ENSMUSP00000010536.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010536.8Link to Ensembl Protein Viewer:ENSMUSP00000010536.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000010536Re-query CCDS DB by Protein ID:ENSMUSP00000010536
Original member Current member NCBI NM_016810.4 NP_058090.2 Accepted alive Link to Nucleotide Sequence:NM_016810.4Link to Protein Sequence:NP_058090.2Re-query CCDS DB by Nucleotide ID:NM_016810Re-query CCDS DB by Protein ID:NP_058090Link to BLAST:NP_058090.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058090.2 250 O88630 250 100% 0 0

Chromosomal Locations for CCDS 25070.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 76730109 76730233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76734569 76734651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76737382 76737411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76748508 76748582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76750811 76750902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76754369 76754476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76754713 76754800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76761235 76761355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76763520 76763550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGGCGGCAGGAACCAGCAATTACTGGGAAGATCTCAGGAAACAAGCTCGGCAGCTGGAAAACGAACTTG
ACCTGAAACTCGTTTCCTTCAGTAAACTCTGTACGAGCTACAGCCACAGCGGCTCACGGGATGGAGGACG
CGATAGGTACAGTTCTGACACAACACCGCTATTAAATGGATCAAGCCAAGACAGAATGTTTGAGACAATG
GCAATTGAAATTGAACAGCTTTTGGCAAGGCTTACAGGAGTAAACGACAAAATGGCAGAGTACACCCACA
GTGCAGGGGTGCCCTCCCTGAATGCAGCCCTGATGCACACGCTGCAGCGACACAGAGACATTCTGCAGGA
TTATACACACGAATTTCATAAAACCAAAGCAAACTTTACGGCAATACGGGAAAGGGAGAATCTCATGGGA
TCAGTACGGAAAGATATTGAGTCATATAAAAGCGGGTCTGGAGTAAACAACAGGAGAACGGAACTGTTTC
TGAAAGAGCATGACCACCTTCGAAACTCTGATCGTCTGATAGAAGAAACAATAAGCATTGCTATGGCAAC
AAAAGAGAATATGACTTCCCAGAGAGGAATGCTCAAGTCAATTCACAGCAAGATGAACACTCTGGCCAAC
CGCTTTCCTGCCGTGAACAGCCTGATACAAAGGATCAACCTTAGGAAACGGCGTGACTCGCTCATCCTTG
GAGGTGTCATTGGCATCTGCACCATCCTGTTGCTGCTGTATGCGTTCCACTGA

Translation (250 aa):
MAAGTSNYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSGSRDGGRDRYSSDTTPLLNGSSQDRMFETM
AIEIEQLLARLTGVNDKMAEYTHSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFTAIRERENLMG
SVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLAN
RFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLYAFH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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