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Report for CCDS37334.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37334.1 Public Mus musculus 16 Stfa2 23 108 98 CCDS HistoryNCBI Gene:20862Re-query CCDS DB by CCDS ID:37334.1Re-query CCDS DB by GeneID:20862See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37334.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023619.7 ENSMUSP00000023619.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023619.7Link to Ensembl Protein Viewer:ENSMUSP00000023619.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023619Re-query CCDS DB by Protein ID:ENSMUSP00000023619
Original member Current member NCBI NM_001082545.1 NP_001076014.1 Accepted alive Link to Nucleotide Sequence:NM_001082545.1Link to Protein Sequence:NP_001076014.1Re-query CCDS DB by Nucleotide ID:NM_001082545Re-query CCDS DB by Protein ID:NP_001076014Link to BLAST:NP_001076014.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001076014.1 103 P35174-2 103 100% 0 0

Chromosomal Locations for CCDS 37334.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 36404027 36404152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36405130 36405231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36408250 36408333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (312 nt):
ATGACTGAATACACCATAGAAATAATTGGAGGTTTGTCAGAGGCCAGACCTGCCACATCAGAAATCCAGG
AGATTGCTGACAAGGTCAGACCACTGCTTGAAGAGAAAACCAATGAGAAATATGAAAAATTCAAAGCCAT
CGAGTATAAAGTTCAAGTCGTCCAAGGACTAAATTACTTCATTAAGATGAATGTAGGACGTGGTTGCTAC
CTCCACATAAACGTCTTAAGTGGTATTTCCAGTGAAAACGATTTGGAACTCACTGGTTATCAGACTAACA
AAGCAAAGAATGATGAGCTGACCTACTTCTAA

Translation (103 aa):
MTEYTIEIIGGLSEARPATSEIQEIADKVRPLLEEKTNEKYEKFKAIEYKVQVVQGLNYFIKMNVGRGCY
LHINVLSGISSENDLELTGYQTNKAKNDELTYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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