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Report for CCDS23940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23940.1 Public Mus musculus 10 Vpreb3 23 108 98 CCDS HistoryNCBI Gene:22364Re-query CCDS DB by CCDS ID:23940.1Re-query CCDS DB by GeneID:22364See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23940.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000926.2 ENSMUSP00000000926.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000926.2Link to Ensembl Protein Viewer:ENSMUSP00000000926.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000000926Re-query CCDS DB by Protein ID:ENSMUSP00000000926
Original member NCBI NM_009514.5 NP_033540.1 Updated not alive Link to Nucleotide Sequence:NM_009514.5Link to Protein Sequence:NP_033540.1Re-query CCDS DB by Nucleotide ID:NM_009514Re-query CCDS DB by Protein ID:NP_033540
Current member NCBI NM_009514.6 NP_033540.1 Accepted alive Link to Nucleotide Sequence:NM_009514.6Link to Protein Sequence:NP_033540.1Re-query CCDS DB by Nucleotide ID:NM_009514Re-query CCDS DB by Protein ID:NP_033540Link to BLAST:NP_033540.1

Chromosomal Locations for CCDS 23940.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 75948358 75948409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75949143 75949462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGGCCTGCCCTGGTTGCCTGCCTCTGCTCCTGATAGGAACCTTTGTGGCAGTCTTTCAGCCAACTCTGA
CCCAGCCTGACGCGTTCTCAGTCTTCCCAGGCCAAGACGCTCATCTCAGCTGCACCATCAATTCCCAGCA
TGCCACCGCTGGAGATATTGGGGTGTCGTGGTACCAGCAGCAGCCAGGAAGTGCTCCCCATCTTCTCTAC
TATTACGCAGAAGAGGAACACTATCGGCCCGCTGACATCCCCGACAGATTCTCAGCTACCGTGGATGCAG
CCCACAACGCCTGTATCCTCACCATCAGCCCCGTGCTCCCGGAGGATGATGCCGATTACTTCTGTTCCAT
CGCCCACACCTTTGAACCCTAG

Translation (123 aa):
MACPGCLPLLLIGTFVAVFQPTLTQPDAFSVFPGQDAHLSCTINSQHATAGDIGVSWYQQQPGSAPHLLY
YYAEEEHYRPADIPDRFSATVDAAHNACILTISPVLPEDDADYFCSIAHTFEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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