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Report for CCDS27211.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27211.1 Public Mus musculus 14 Extl3 23 108 98 CCDS HistoryNCBI Gene:54616Re-query CCDS DB by CCDS ID:27211.1Re-query CCDS DB by GeneID:54616See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27211.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022550.7 ENSMUSP00000022550.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022550.7Link to Ensembl Protein Viewer:ENSMUSP00000022550.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022550Re-query CCDS DB by Protein ID:ENSMUSP00000022550
Original member Current member EBI ENSMUST00000225633.1 ENSMUSP00000153547.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225633.1Link to Ensembl Protein Viewer:ENSMUSP00000153547.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225633Re-query CCDS DB by Protein ID:ENSMUSP00000153547
Original member NCBI NM_001360385.1 NP_001347314.1 Updated not alive Link to Nucleotide Sequence:NM_001360385.1Link to Protein Sequence:NP_001347314.1Re-query CCDS DB by Nucleotide ID:NM_001360385Re-query CCDS DB by Protein ID:NP_001347314
Current member NCBI NM_001360385.2 NP_001347314.1 Accepted alive Link to Nucleotide Sequence:NM_001360385.2Link to Protein Sequence:NP_001347314.1Re-query CCDS DB by Nucleotide ID:NM_001360385Re-query CCDS DB by Protein ID:NP_001347314Link to BLAST:NP_001347314.1
Original member NCBI NM_018788.3 NP_061258.2 Updated not alive Link to Nucleotide Sequence:NM_018788.3Link to Protein Sequence:NP_061258.2Re-query CCDS DB by Nucleotide ID:NM_018788Re-query CCDS DB by Protein ID:NP_061258
Current member NCBI NM_018788.4 NP_061258.2 Accepted alive Link to Nucleotide Sequence:NM_018788.4Link to Protein Sequence:NP_061258.2Re-query CCDS DB by Nucleotide ID:NM_018788Re-query CCDS DB by Protein ID:NP_061258Link to BLAST:NP_061258.2

Chromosomal Locations for CCDS 27211.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 65054613 65054822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65056831 65056959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65058985 65059129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65066683 65066810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65075584 65077731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2760 nt):
ATGACAGGCTATACCATGTTGCGGAATGGGGGAGTGGGGAACGGTGGTCAGACCTGTATGCTGCGCTGGT
CCAATCGCATCCGGCTGACATGGCTGAGTTTCACGCTGTTCATCATCCTCGTCTTCTTCCCCCTCATTGC
TCACTATTACCTCACCACTCTGGACGAGGCAGACGAGGCTGGCAAGCGCATCTTCGGCCCTCGGGCTGGC
AGTGAGCTCTGTGAGGTAAAGCACGTCCTCGATCTCTGTCGGATTCGTGAGTCTGTGAGCGAAGAGCTTC
TACAGCTCGAAGCCAAGCGGCAGGAGCTGAACAGCGAGATTGCCAAGCTGAACCTCAAGATTGAAGCCTG
TAAGAAGAGCATAGAGAATGCCAAGCAGGACCTGCTGCAGCTCAAGAATGTCATTAGCCAGACAGAGCAC
TCCTACAAGGAGCTGATGGCCCAGAACCAGCCCAAACTGTCCCTGCCCATCCGACTGCTCCCCGAGAAGG
ACGATGCCGGCCTTCCACCCCCCAAGGTCACTCGGGGTTGCCGCCTTCACAACTGCTTTGATTACTCTCG
TTGTCCTCTGACGTCTGGCTTTCCCGTCTACGTCTATGACAGTGACCAGTTTGCCTTTGGGAGCTACCTG
GACCCTTTGGTCAAGCAGGCTTTTCAGGCTACAGTGAGAGCCAACGTTTATGTTACAGAAAATGCGGCCA
TCGCCTGCCTGTATGTGGTGTTAGTGGGAGAAATGCAAGAGCCCACTGTGCTGCGGCCTGCCGACCTTGA
AAAGCAGCTGTTTTCTCTGCCACACTGGAGGACAGATGGGCACAACCACGTCATTATCAACCTGTCCCGG
AAGTCAGACACACAGAATCTACTGTACAACGTCAGTACAGGCCGGGCCATGGTGGCCCAGTCCACCTTCT
ATGCTGCCCAGTACAGAGCTGGCTTTGACCTGGTCGTGTCACCCCTTGTCCATGCTATGTCTGAACCCAA
CTTCATGGAAATCCCACCGCAGGTGCCAGTTAAGCGGAAATATCTCTTCACTTTCCAGGGCGAGAAGATC
GAGTCTCTGAGATCTAGCCTTCAGGAGGCCCGTTCCTTCGAGGAAGAGATGGAGGGCGACCCTCCGGCCG
ACTATGACGATCGCATCATTGCCACCCTAAAGGCCGTACAGGACAGCAAGCTGGATCAGGTGCTGGTAGA
ATTCACTTGCAAAAACCAGCCGAAGCCCAGCCTGCCGACTGAGTGGGCACTGTGTGGGGAGCGGGAAGAC
CGCCTGGAGTTACTGAAGCTCTCCACCTTCGCCCTCATCATCACTCCCGGGGACCCGCACCTGCTCATTT
CATCTGGGTGTGCCACGCGGCTCTTCGAGGCCCTGGAGGTGGGGGCCGTGCCGGTGGTGCTCGGGGAGCA
GGTGCAGCTCCCGTACCACGACATGCTGCAGTGGAACGAGGCCGCCCTGGTGGTGCCCAAGCCTCGCGTC
ACAGAGGTCCACTTCCTGTTACGAAGTCTTTCAGACAGTGATCTGTTGGCCATGAGGCGGCAAGGCCGCT
TTCTCTGGGAGACCTACTTCTCCACCGCAGACAGTATTTTTAATACCGTGCTGGCCATGATTAGGACTCG
AATTCAGATCCCAGCTGCTCCCATCCGGGAAGAGGTAGCGGCTGAGATCCCCCATCGTTCAGGCAAAGCA
GCTGGAACTGACCCCAACATGGCTGACAATGGGGACCTGGACCTGGGGCCGGTAGAGACAGAACCACCCT
ATGCCTCACCTAAATACCTCCGCAATTTCACTCTGACTGTCACAGACTGTTACCGTGGCTGGAACTCTGC
CCCGGGACCCTTCCATCTTTTTCCCCACACACCCTTTGATCCTGTGTTGCCCTCTGAGGCCAAATTCCTG
GGCTCAGGGACTGGATTTCGGCCCATCGGTGGCGGGGCTGGGGGCTCTGGCAAGGAGTTCCAGGCAGCGC
TCGGAGGCAATGTCCAGCGGGAGCAGTTCACAGTTGTGATGCTGACCTACGAGCGGGAGGAAGTGCTCAT
GAACTCCCTGGAGAGACTCAACGGCCTCCCCTACCTGAACAAGGTAGTGGTGGTGTGGAACTCTCCCAAG
CTGCCCTCGGAGGACCTTTTGTGGCCAGACATTGGTGTCCCCATCATGGTCGTCCGTACTGAGAAGAACA
GTTTGAACAATCGGTTCTTGCCCTGGAATGAGATTGAGACAGAGGCCATACTGTCCATCGACGATGATGC
TCACCTCCGCCATGATGAAATCATGTTTGGGTTTCGGGTGTGGAGAGAAGCACGTGATCGCATTGTGGGT
TTCCCTGGCCGGTACCATGCGTGGGACATACCACACCAGTCCTGGCTCTACAATTCCAACTACTCCTGTG
AGCTGTCCATGGTGCTGACGGGCGCTGCCTTCTTTCACAAGTATTATGCCTACCTGTATTCTTATGTGAT
GCCCCAGGCCATCCGGGACATGGTGGACGAGTACATCAACTGTGAGGATATCGCCATGAACTTCCTTGTC
TCCCACATCACACGGAAACCCCCCATCAAGGTGACATCAAGGTGGACTTTTCGATGCCCAGGGTGCCCTC
AGGCCCTGTCCCATGATGACTCTCATTTTCACGAGCGGCACAAGTGTATCAACTTTTTTGTCAAGGTGTA
CGGCTATATGCCTCTCTTGTACACACAGTTCAGGGTGGACTCCGTGCTCTTCAAGACCCGCCTGCCCCAT
GACAAGACCAAGTGCTTCAAGTTCATCTAG

Translation (919 aa):
MTGYTMLRNGGVGNGGQTCMLRWSNRIRLTWLSFTLFIILVFFPLIAHYYLTTLDEADEAGKRIFGPRAG
SELCEVKHVLDLCRIRESVSEELLQLEAKRQELNSEIAKLNLKIEACKKSIENAKQDLLQLKNVISQTEH
SYKELMAQNQPKLSLPIRLLPEKDDAGLPPPKVTRGCRLHNCFDYSRCPLTSGFPVYVYDSDQFAFGSYL
DPLVKQAFQATVRANVYVTENAAIACLYVVLVGEMQEPTVLRPADLEKQLFSLPHWRTDGHNHVIINLSR
KSDTQNLLYNVSTGRAMVAQSTFYAAQYRAGFDLVVSPLVHAMSEPNFMEIPPQVPVKRKYLFTFQGEKI
ESLRSSLQEARSFEEEMEGDPPADYDDRIIATLKAVQDSKLDQVLVEFTCKNQPKPSLPTEWALCGERED
RLELLKLSTFALIITPGDPHLLISSGCATRLFEALEVGAVPVVLGEQVQLPYHDMLQWNEAALVVPKPRV
TEVHFLLRSLSDSDLLAMRRQGRFLWETYFSTADSIFNTVLAMIRTRIQIPAAPIREEVAAEIPHRSGKA
AGTDPNMADNGDLDLGPVETEPPYASPKYLRNFTLTVTDCYRGWNSAPGPFHLFPHTPFDPVLPSEAKFL
GSGTGFRPIGGGAGGSGKEFQAALGGNVQREQFTVVMLTYEREEVLMNSLERLNGLPYLNKVVVVWNSPK
LPSEDLLWPDIGVPIMVVRTEKNSLNNRFLPWNEIETEAILSIDDDAHLRHDEIMFGFRVWREARDRIVG
FPGRYHAWDIPHQSWLYNSNYSCELSMVLTGAAFFHKYYAYLYSYVMPQAIRDMVDEYINCEDIAMNFLV
SHITRKPPIKVTSRWTFRCPGCPQALSHDDSHFHERHKCINFFVKVYGYMPLLYTQFRVDSVLFKTRLPH
DKTKCFKFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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