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Report for CCDS88470.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88470.1 Public Mus musculus 13 Zfp934 23 108 98 CCDS HistoryNCBI Gene:77117Re-query CCDS DB by CCDS ID:88470.1Re-query CCDS DB by GeneID:77117See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88470.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000220648.1 ENSMUSP00000152492.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220648.1Link to Ensembl Protein Viewer:ENSMUSP00000152492.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220648Re-query CCDS DB by Protein ID:ENSMUSP00000152492
Original member Current member NCBI NM_175252.5 NP_780461.3 Accepted alive Link to Nucleotide Sequence:NM_175252.5Link to Protein Sequence:NP_780461.3Re-query CCDS DB by Nucleotide ID:NM_175252Re-query CCDS DB by Protein ID:NP_780461Link to BLAST:NP_780461.3

Chromosomal Locations for CCDS 88470.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 62517500 62518730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 62520172 62520232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 62520418 62520451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1326 nt):
ATGCTGGAGACCTACAGGAACCTCAATGCTATAGGCTTTAATTGGGAAGCCCAAAATATTGAAGAACATT
GTCAAAGTTCTAGAAGACACAGAAGGTGTGAAAGGAGTCAGAGTGCAGAGAAACCCTCTGAATATACTCA
ACGTGATAAAGCCTTTGCTTTATCTGCTCACAGTCATGCCCAAAGGCATGAAAGGATTCATACAGAAAAG
ATCCCCTCTGAAGATATTCACTGTGTCGAAGACGTTTTACCTTACACTAGTCTCCAAGTACATAAAAGAA
CACAAACTGGACAGAAACCCTATGAATGTAAACAATGTGGTAAAGGATTTGCAAAGCCCAGTCATCTTAA
AAGGCACGAAAGATATCATACTGGAGAGCAACCCTTCACATGTAATGAATGTGATAAAGTCTTTTCTTTT
AAACATCATCTCCAAACACATATAAGCATACGTACTGGAGAGAAACCCTTCAAATGTAATCTGTGTGATA
AATCCTTTTCAAAACATAATCATCTTCAAAGTCATAGAAGAACACATACTGGAGAGAAACCCTACAAATG
TGATCAATGTGATAAAGCCTTTTCTGAGAAATGTAATCTCCAAACACATATAAGGATACATTCTGGAGAG
AAACCCTACAAATGTGATCAATGTGATAAAACCTTTTCTGAGAAATGTCATCTCCAAAAACATATAAGGA
TACATACTGGAGAGAAACCCTACAAATGTAATCAATGTGATAAAGCCTTTTCTCAATACAATACTCTTAA
AACTCATAGAAGAACACATACTGGAGAGAAACCCTACAAATGTAATCAGTGTGATAAAGCCTTTTCTCAA
TACGGTCATCTTCAAACTCATAGAAGAACACATACTGGAGAGAAACCCTACAAATGTAATCAGTGTGATA
AAGCCTTTTCTCAATACAATACTCTTAAAACTCATAGAAGAACACATACTGGAGAGAAACCCTACAAATG
TAATCAGTGTGATAAAGCCTTTTCTGAGAAATGTAGTCTCCAAAGACATATAAGGATACATACTGGAGAG
AAACCCTACAAATGTAATCAGTGTGATAAAGCCTTTTCTCAATACAGTACTCTTCAAACTCATAGAAGAA
CACATACTGGAGAGAAACCCTACAAATGTAATCAATGCGATAAAGCCTTTTCTCAATACAGTAATCTTCA
AACTCATAGAAGAACACATACTGGAGAGAAACCCTACAAATGTAATCAGTGTGATAAAGCCTTTTCTATG
AAATGTAATCTCCAAAACCATGTAAGGATACATACTGGACAAAAACCCTTCAAATGTAATCAATGA

Translation (441 aa):
MLETYRNLNAIGFNWEAQNIEEHCQSSRRHRRCERSQSAEKPSEYTQRDKAFALSAHSHAQRHERIHTEK
IPSEDIHCVEDVLPYTSLQVHKRTQTGQKPYECKQCGKGFAKPSHLKRHERYHTGEQPFTCNECDKVFSF
KHHLQTHISIRTGEKPFKCNLCDKSFSKHNHLQSHRRTHTGEKPYKCDQCDKAFSEKCNLQTHIRIHSGE
KPYKCDQCDKTFSEKCHLQKHIRIHTGEKPYKCNQCDKAFSQYNTLKTHRRTHTGEKPYKCNQCDKAFSQ
YGHLQTHRRTHTGEKPYKCNQCDKAFSQYNTLKTHRRTHTGEKPYKCNQCDKAFSEKCSLQRHIRIHTGE
KPYKCNQCDKAFSQYSTLQTHRRTHTGEKPYKCNQCDKAFSQYSNLQTHRRTHTGEKPYKCNQCDKAFSM
KCNLQNHVRIHTGQKPFKCNQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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