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Report for CCDS36701.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36701.1 Public Mus musculus 13 Ercc6l2 23 108 98 CCDS HistoryNCBI Gene:76251Re-query CCDS DB by CCDS ID:36701.1Re-query CCDS DB by GeneID:76251See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36701.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067821.12 ENSMUSP00000069488.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067821.12Link to Ensembl Protein Viewer:ENSMUSP00000069488.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000067821Re-query CCDS DB by Protein ID:ENSMUSP00000069488
Original member NCBI NM_023507.4 NP_075996.2 Updated not alive Link to Nucleotide Sequence:NM_023507.4Link to Protein Sequence:NP_075996.2Re-query CCDS DB by Nucleotide ID:NM_023507Re-query CCDS DB by Protein ID:NP_075996
Current member NCBI NM_023507.5 NP_075996.2 Accepted alive Link to Nucleotide Sequence:NM_023507.5Link to Protein Sequence:NP_075996.2Re-query CCDS DB by Nucleotide ID:NM_023507Re-query CCDS DB by Protein ID:NP_075996Link to BLAST:NP_075996.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075996.2 699 Q9JIM3-2 699 100% 0 0

Chromosomal Locations for CCDS 36701.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 63815475 63815517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63819631 63820055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63824809 63824928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63834596 63834789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63841424 63841585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63841962 63842169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63844546 63844686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63847341 63847454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63848741 63848860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63852951 63853022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63853628 63853773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63858231 63858326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63865958 63866057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63869026 63869184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2100 nt):
ATGGACATCTCCGCCCCGCAGTCCCGCGCAGACTCCCGCAAAGACAGGTGGTGTCCGGGAGAAAGATGTC
TTGCTCCATCTTTGGATAACAAAAAGCTTTGTGAAGCAAGCATAAAATCTATTACTGTGGATGGAAATGG
GAAACCTTTTGCAGTTGTCCTGTATCCAGACTTTCAAGAAAAGACAATACCTCTTCAAAGACTTCAAGAA
GTAAAATCAACTAAAGATTACTCCAGAAGTCTTATATTTGATGATAAAGATTTAGAAAAACCTTATTTCC
CAGATCGAAAAATTCCATCTTTGGCTAGTGCTTTTCAATTATCTGAAGATGGAGACTCAATTCCTTATAC
TATTAATAGGTACTTGCGAGATTACCAAAGGGAGGGGGCTCAGTTCCTCTACAGACACTACATAGAGGGG
AGAGGGTGTATTCTTGGTGATGACATGGGACTTGGAAAAACAATACAGGTTATTTCATTTCTGGCTGCAG
TTTTGCATAAAAAGGGAACTCGTGAAGATATTGAAAATAACATGCCAGAGTTTTTACTAAAAAGTATGAA
AAAGAAGCCGCCTTCTACAGCTAAAAAGATGTTCTTAATAGTTGCTCCTCTTTCTGTCCTCTACAACTGG
AAGGATGAATTGGATACCTGGGGATATTTCAGAGTTACTGTTTTACACGGTAGCAAAAAAGACAATGAGC
TGCTTCGTTTAAAGCAGAGGAAATGTGAAATTGCTCTGACGACCTATGAAACACTGCGCTTGTGTCTGGA
GGAGCTTAACAGTTTGGAATGGTCAGCTATTATTGTAGATGAAGCTCATAGAATCAAGAATCCAAAAGCC
CGAGTTACAGAAGTTATGAAGGCTGTGAAGTGTAAGGTCCGCATTGGCCTCACTGGTACTGTCCTTCAGA
ACAACATGAAGGAGCTGTGGTGTGTCATGGACTGGGCTGTGCCAGGACTTTTAGGTAGCAGGATTCACTT
CAAGAAGCAATTTTCTGACCCAGTGGAACATGGCCAGAGACACACAGCAACAAAAAGAGAACTTGCTACT
GGCCGAAAAGCCATGCACAGGCTTGCAAAAAAGATGTCTGGCTGGTTTCTCAGGCGTACCAAGACTCTTA
TCAAGGGCCAGCTGCCTAAGAAAGAAGACCGGATGGTGTATTGTTCTTTGACAGACTTCCAGAAAGCTGT
CTACCAAACAGTGTTAGAAACAGAAGATGTGGCTCTGATCCTCACATCCTCTCAGCCTTGTACCTGTGGC
AGTGGCCAGAAGCGCAGAAAGTGTTGTTACAAGACCAACTCACGGGGTGACACAGTGAGAACCTTGTGCC
TTAGTTACCTGACTGTGCTTCAGAAAGTAGCTAACCATGTTGCACTGCTGCAGGCTGCTAGCACCTCCAA
ACATCAGGAAACAGTTATCAAGAGGATATGTGATCGGGTATTTTCCAGATTCCCAGATTTTGTGCAGAAA
AGCAAAGATGCAGCCTTTGAGACACTTTCTGACCCTAAATATAGTGGGAAAATGAAGGTCCTCCAGCAGC
TTTTGAATCATTTTAGGAAACAAAGAGATAAGGTTCTTCTCTTTTCCTTTTCCACCAAGCTGCTGGATGT
GCTGCAGCAGTACTGTATGGCCTCGGGCCTCGATTACCGGCGACTCGATGGAAGCACAAAGTCCGAGGAA
AGGCTCAAGATTGTGAAGGAGTTTAACAGTTCACAAGATGTGAACATTTGTCTTGTCTCCACAATGGCTG
GTGGACTAGGTCTCAATTTTGTTGGGGCCAACGTTGTTATATTATTTGATCCAACTTGGAATCCAGCCAA
CGATCTTCAAGCTGTTGACAGAGCGTATAGGATTGGACAGTGTAGAGACGTTAAAGTGCTTAGGCTAATA
TCCTTGGGCACAGTGGAGGAGATCATGTACTTACGACAAGTCTACAAGCAGCAACTTCACTGTGTGGTGG
TTGGAAGTGAAAATGCCAAGCGATACTTTGAAGCAGTACAAGGATCAAAAGAACATCGAGGAGAGCTCTT
TGGTGTCCACAACCTCTTCAAACTAAGGTCCCAAGGGTCATGTCTTACGAGAGACATCCTGGAGGTGTGA

Translation (699 aa):
MDISAPQSRADSRKDRWCPGERCLAPSLDNKKLCEASIKSITVDGNGKPFAVVLYPDFQEKTIPLQRLQE
VKSTKDYSRSLIFDDKDLEKPYFPDRKIPSLASAFQLSEDGDSIPYTINRYLRDYQREGAQFLYRHYIEG
RGCILGDDMGLGKTIQVISFLAAVLHKKGTREDIENNMPEFLLKSMKKKPPSTAKKMFLIVAPLSVLYNW
KDELDTWGYFRVTVLHGSKKDNELLRLKQRKCEIALTTYETLRLCLEELNSLEWSAIIVDEAHRIKNPKA
RVTEVMKAVKCKVRIGLTGTVLQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEHGQRHTATKRELAT
GRKAMHRLAKKMSGWFLRRTKTLIKGQLPKKEDRMVYCSLTDFQKAVYQTVLETEDVALILTSSQPCTCG
SGQKRRKCCYKTNSRGDTVRTLCLSYLTVLQKVANHVALLQAASTSKHQETVIKRICDRVFSRFPDFVQK
SKDAAFETLSDPKYSGKMKVLQQLLNHFRKQRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEE
RLKIVKEFNSSQDVNICLVSTMAGGLGLNFVGANVVILFDPTWNPANDLQAVDRAYRIGQCRDVKVLRLI
SLGTVEEIMYLRQVYKQQLHCVVVGSENAKRYFEAVQGSKEHRGELFGVHNLFKLRSQGSCLTRDILEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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