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Report for CCDS20668.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20668.1 Public Mus musculus 6 Mgst1 23 108 98 CCDS HistoryNCBI Gene:56615Re-query CCDS DB by CCDS ID:20668.1Re-query CCDS DB by GeneID:56615See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20668.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000008684.10 ENSMUSP00000008684.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000008684.10Link to Ensembl Protein Viewer:ENSMUSP00000008684.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000008684Re-query CCDS DB by Protein ID:ENSMUSP00000008684
Original member Current member EBI ENSMUST00000120302.7 ENSMUSP00000113257.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120302.7Link to Ensembl Protein Viewer:ENSMUSP00000113257.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120302Re-query CCDS DB by Protein ID:ENSMUSP00000113257
Original member Current member EBI ENSMUST00000120230.7 ENSMUSP00000113859.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120230.7Link to Ensembl Protein Viewer:ENSMUSP00000113859.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120230Re-query CCDS DB by Protein ID:ENSMUSP00000113859
Original member Current member NCBI NM_001361308.1 NP_001348237.1 Accepted alive Link to Nucleotide Sequence:NM_001361308.1Link to Protein Sequence:NP_001348237.1Re-query CCDS DB by Nucleotide ID:NM_001361308Re-query CCDS DB by Protein ID:NP_001348237Link to BLAST:NP_001348237.1
Original member Current member NCBI NM_001361309.1 NP_001348238.1 Accepted alive Link to Nucleotide Sequence:NM_001361309.1Link to Protein Sequence:NP_001348238.1Re-query CCDS DB by Nucleotide ID:NM_001361309Re-query CCDS DB by Protein ID:NP_001348238Link to BLAST:NP_001348238.1
Original member Current member NCBI NM_019946.5 NP_064330.2 Accepted alive Link to Nucleotide Sequence:NM_019946.5Link to Protein Sequence:NP_064330.2Re-query CCDS DB by Nucleotide ID:NM_019946Re-query CCDS DB by Protein ID:NP_064330Link to BLAST:NP_064330.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348237.1 155 Q91VS7 155 100% 0 0
NP_001348238.1 155 Q91VS7 155 100% 0 0
NP_064330.2 155 Q91VS7 155 100% 0 0

Chromosomal Locations for CCDS 20668.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 138147690 138147815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138150768 138150862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138156132 138156378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (468 nt):
ATGGCCGACCTCAGGCAGCTCATGGACAATGAGGTGTTGATGGCCTTTACCTCCTATGCAACGATCATTC
TTACCAAGATGATGTTCATGAGCTCTGCGACCGCATTCCAGAGGATAACCAACAAGGTTTTTGCCAACCC
AGAAGACTGCGCTGGCTTTGGCAAGGGAGAGAATGCCAAGAAGTTTGTTCGCACTGACGAGAAGGTGGAA
CGCGTGCGCAGAGCCCACCTGAATGATCTTGAAAACATCGTTCCCTTTCTCGGCATCGGCCTCCTGTACT
CCCTGAGTGGACCAGATCTCTCTACAGCCCTCATGCACTTCAGAATCTTTGTAGGTGCTCGGATCTACCA
CACCATTGCTTACTTGACTCCCCTTCCTCAGCCAAACAGGGGCTTGGCATTTTTTGTTGGCTATGGAGTT
ACTTTGTCAATGGCTTACAGGCTGCTAAGGAGCAGACTGTACTTGTAA

Translation (155 aa):
MADLRQLMDNEVLMAFTSYATIILTKMMFMSSATAFQRITNKVFANPEDCAGFGKGENAKKFVRTDEKVE
RVRRAHLNDLENIVPFLGIGLLYSLSGPDLSTALMHFRIFVGARIYHTIAYLTPLPQPNRGLAFFVGYGV
TLSMAYRLLRSRLYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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