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Report for CCDS85141.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85141.1 Public Mus musculus 6 Rasgef1a 23 108 98 CCDS HistoryNCBI Gene:70727Re-query CCDS DB by CCDS ID:85141.1Re-query CCDS DB by GeneID:70727See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85141.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164960.3 ENSMUSP00000132244.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164960.3Link to Ensembl Protein Viewer:ENSMUSP00000132244.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000164960Re-query CCDS DB by Protein ID:ENSMUSP00000132244
Original member Current member NCBI NM_001316749.2 NP_001303678.1 Accepted alive Link to Nucleotide Sequence:NM_001316749.2Link to Protein Sequence:NP_001303678.1Re-query CCDS DB by Nucleotide ID:NM_001316749Re-query CCDS DB by Protein ID:NP_001303678Link to BLAST:NP_001303678.1
Original member Current member NCBI NM_001362104.1 NP_001349033.1 Accepted alive Link to Nucleotide Sequence:NM_001362104.1Link to Protein Sequence:NP_001349033.1Re-query CCDS DB by Nucleotide ID:NM_001362104Re-query CCDS DB by Protein ID:NP_001349033Link to BLAST:NP_001349033.1

Chromosomal Locations for CCDS 85141.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 118080364 118080561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118083014 118083136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118084421 118084558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118085264 118085485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118085773 118085847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118086217 118086309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118087027 118087129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118087207 118087286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118088109 118088300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118089103 118089226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118089435 118089507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118089816 118089840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1446 nt):
ATGCCCCAGACATCTGTGGTCTTCTCCAGCATCCTTGGGCCCAACTGTAACAGACAGGTGCAGCCTGGCA
TG
GGGGAGAGAGGAGGTGGGGCCAGCAGCGGCTCCAAGGACCTCATTTTTCAAGATGGACGCCTCACTTC
T
GGGTCCTTGGAGGCCTTGATGGAGCATCTGGTTCCAACGGTGGACTATTATCCTGATCGGACATACATC
TTC
ACGTTTCTCCTGAGTTCCCGGGTCTTCATGCCCCCTCATGACCTTCTGGCTCGAGTAGGGCAGATCT
GC
CTGGAGCAGAGGCAACAGCTAGAGGCTGGGCCTGAGAAGGCCAAGCTGAAGTCCTTCTCGACCAAGAT
T
GTGCAGCTGTTGAAGGAGTGGACGGAGGCCTTCCCTTATGACTTCCAGGACGAGAAGGTCATGGCGGAG
CTG
AAGGCCATCGCACACCGCGTCACTCAGTGTGATGAGGAGAATGGCACAGTGAAGAAAGCCATTGCCC
AA
ATGATACAAAGCTTGCTGCTGTCCCTGGCTGCCCGAAGTCAGCTCCAAGAGCTTCGGGAGAAGCTCCG
G
TCACCCGTTGTGGACAAAGGGCCTGTCCTTAAGGCCAAGCCACCAGCTGCCCAGAAAGACATCCTGGGT
GTG
TGCAGCGACCCCCTGGTGCTGGCCCAGCAGCTGACTCACATTGAACTGGAACGGGTCAACAGCATCC
GC
CCTGAGGACCTGATGCAGATCATCAGCCACATGGACTCTCTGGACAATCACAGGTGCCGTGGAGACAT
G
ACTAAGACCTTCAGTTTAGAAGCGTATGACAACTGGTTCAACTGCTTGAGCATGCTCGTGGCTACAGAG
GTG
TGCCGGGTGGTAAAGAAGAAACACCGGACCCGCATGCTGGAGTTCTTCATTGATGTGGCCCGAGAGT
GT
TTCAACATCGGGAACTTCAACTCTATGATGGCCATCATATCTGGCATGAACCTCAGCCCAGTGGCACG
G
CTGAAGAAAACGTGGTCCAAAGTCAAGACAGCCAAGTTTGATGTCTTGGAGCATCACATGGACCCCTCC
AGC
AACTTCTGCAACTACCGGACAGCCCTGCAGGGGGCGACACAGAGATCCCAGACAGCCAACAGCAGCC
GT
GAGAAGATTGTCATCCCCGTGTTCAACCTCTTCGTTAAGGACATCTACTTTCTACACAAAATCCACAC
C
AACCACCTACCCAATGGGCACATTAACTTCAAAAAATTTTGGGAAATTTCCAGACAGATCCACGAGTTC
ATG
ACATGGACACAGGTAGAATGTCCCTTTGAGAAGGACAAGAAGATTCAGAGTTACGTGCTCACGGCGC
CC
ATCTACAGCGAGGAAGCTCTCTTCATCGCCTCCTTTGAAAGTGAAGGTCCTGAAAATCACATGGAGAA
G
GACAGCTGGAAGGCACTCAGGACCACTCTCCTTAACAGAGCCTGA


Translation (481 aa):
MPQTSVVFSSILGPNCNRQVQPGMGERGGGASSGSKDLIFQDGRLTSGSLEALMEHLVPTVDYYPDRTYI
F
TFLLSSRVFMPPHDLLARVGQICLEQRQQLEAGPEK
AKLKSFSTKIVQLLKEWTEAFPYDFQDEKVMAE
L
KAIAHRVTQCDE
ENGTVKKAIAQMIQSLLLSLAARSQLQELREKLRSPVVDKGPVLKAKPPAAQKDILG
V
CSDPLVLAQQLTHIEL
ERVNSIRPEDLMQIISHMDSLDNHRCRGDMTKTFSLEAYDNWFNCLSMLVATE
V
CR
VVKKKHRTRMLEFFIDVARECFNIGNFNSMMAIISGMNLSPVARLKKTWSKVKTAKFDVLEHHMDPS
S
NFCNYRTALQGATQRSQTANSSREKIVIPVFNLFVKDIYFLHKIHTNHLPNGHINFK
KFWEISRQIHEF
M
TWTQVECPFEKDKKIQSYVLTAPIYSEE
ALFIASFESEGPENHMEKDSWKALRTTLLNRA



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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