NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18810.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18810.1 Public Mus musculus 4 C1qb 23 108 98 CCDS HistoryNCBI Gene:12260Re-query CCDS DB by CCDS ID:18810.1Re-query CCDS DB by GeneID:12260See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18810.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046384.8 ENSMUSP00000040246.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046384.8Link to Ensembl Protein Viewer:ENSMUSP00000040246.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000046384Re-query CCDS DB by Protein ID:ENSMUSP00000040246
Original member Current member NCBI NM_009777.3 NP_033907.1 Accepted alive Link to Nucleotide Sequence:NM_009777.3Link to Protein Sequence:NP_033907.1Re-query CCDS DB by Nucleotide ID:NM_009777Re-query CCDS DB by Protein ID:NP_033907Link to BLAST:NP_033907.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033907.1 253 P14106 253 100% 0 0

Chromosomal Locations for CCDS 18810.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 136880289 136880869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136882127 136882307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGAAGACACAGTGGGGTGAGGTCTGGACACACCTGTTACTGCTGCTTCTAGGTTTTCTCCATGTGTCCT
GGGCCCAAAGCAGCTGCACCGGGCCCCCTGGCATCCCTGGCATCCCTGGGGTCCCTGGGGTTCCTGGCTC
TGATGGCCAACCAGGCACTCCAGGGATAAAGGGGGAGAAAGGGCTCCCTGGACTGGCTGGAGACCTTGGT
GAGTTTGGAGAGAAAGGGGACCCAGGGATCCCTGGGACTCCAGGCAAAGTTGGCCCTAAGGGTCCCGTCG
GCCCTAAGGGTACTCCAGGCCCCTCTGGACCCCGCGGTCCCAAAGGCGATTCTGGGGACTACGGGGCTAC
ACAGAAAGTCGCCTTCTCTGCCCTGAGGACCATCAACAGCCCCTTGCGACCGAACCAGGTCATTCGCTTC
GAAAAGGTGATCACCAACGCGAACGAGAACTATGAGCCACGCAACGGCAAGTTCACCTGCAAGGTGCCTG
GCCTCTACTACTTCACCTATCATGCCAGCTCCCGGGGCAACCTGTGTGTGAATCTCGTTCGTGGCCGCGA
TCGGGACAGCATGCAGAAAGTAGTCACCTTCTGTGACTATGCCCAGAACACCTTCCAGGTGACCACAGGT
GGGGTAGTCTTGAAGCTAGAGCAAGAGGAGGTTGTTCACCTGCAGGCCACAGACAAGAACTCCCTCCTGG
GCATTGAGGGTGCCAACAGCATCTTCACTGGCTTTCTGCTTTTCCCTGACATGGATGCGTAA

Translation (253 aa):
MKTQWGEVWTHLLLLLLGFLHVSWAQSSCTGPPGIPGIPGVPGVPGSDGQPGTPGIKGEKGLPGLAGDLG
EFGEKGDPGIPGTPGKVGPKGPVGPKGTPGPSGPRGPKGDSGDYGATQKVAFSALRTINSPLRPNQVIRF
EKVITNANENYEPRNGKFTCKVPGLYYFTYHASSRGNLCVNLVRGRDRDSMQKVVTFCDYAQNTFQVTTG
GVVLKLEQEEVVHLQATDKNSLLGIEGANSIFTGFLLFPDMDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH