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Report for CCDS20676.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20676.1 Public Mus musculus 6 Pde3a 23 108 98 CCDS HistoryNCBI Gene:54611Re-query CCDS DB by CCDS ID:20676.1Re-query CCDS DB by GeneID:54611See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20676.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043259.9 ENSMUSP00000038749.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043259.9Link to Ensembl Protein Viewer:ENSMUSP00000038749.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000043259Re-query CCDS DB by Protein ID:ENSMUSP00000038749
Original member Current member NCBI NM_018779.2 NP_061249.1 Accepted alive Link to Nucleotide Sequence:NM_018779.2Link to Protein Sequence:NP_061249.1Re-query CCDS DB by Nucleotide ID:NM_018779Re-query CCDS DB by Protein ID:NP_061249Link to BLAST:NP_061249.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061249.1 1141 Q9Z0X4 1141 100% 0 0

Chromosomal Locations for CCDS 20676.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 141249590 141250543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141405182 141405232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141459056 141459310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141459684 141459838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141466117 141466241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141470942 141471161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141476741 141476826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141479326 141479480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141481116 141481253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141483854 141483965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141487496 141487609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141487759 141487958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141488799 141489002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141490110 141490265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141492132 141492390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141498652 141498893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3426 nt):
ATGGCAGTGCGGGGCGAGGCCGCCCAAGACCTAGCCAAGCCGGGCCTCGGAGGGGCGAGTCCCGCCCGTG
TGGCAAGAGGGAACCACCGCCATCGTGGCGAGTCCTCTCCATCCCCTCGGGGCTCCGGCTGTTGTTGGAG
AGCCCTGGCGCTGCAGCCGCTCCGGCGCTCGCCTCAACTCTCCTCGGCGCTGTGCGCGGGCTCCCTGTCC
GTGCTGCTGGCGCTGCTGGTGAGGCTGGTCGGCGGGGAGGTCGGAGGCGAGCTGGAGAAGAGTCAGGAGG
CGGCGGCCGAGGAGGAGGAGGAGGAAGGAGCCCGAGGGGGCGTCTTCCCGGGCCCTCGGGGAGGTGCTCC
CGGGGGCGGCGCGCAGCTCAGCCCTTGGCTGCAGCCGGCCGCGCTGCTCTTCAGTCTCCTGTGCGCCTTC
TTCTGGATGGGCTTGTGCCTGCTGCGCGCCGGGGTGCGCCTGCCTCTGGCCGTCGCGCTGTTGGCCGCCT
GCTGCGCCGGGGAAGCGCTGGTGCAGCTCTCCTTGGGCGTGGGGGACGGTCGCCTGCTGTCGCTGCCCGC
CGCGGGGGTCCTGCTCAGCTGCCTAGGTGGCGCGACATGGCTGGTGCTGAGGCTGAGGCTGGGCGTCCTC
ATGGTCGCCTGGACTAGCGTGCTTAGGACGGTGGCCCTGGTTTCTCTGGAGAGGTTCAAGGTCGCCTGGA
GACCTTACCTGGCATACTTGGCGGCCGTGCTTGGGCTGCTGCTGGCCAGGTACGCCGAGCAGATCCTGCC
GCAGTGCTCCGGGCCGGCTCCGCCCAGGGAGCGGTTTGGGTCCCAGTTGAGCGCGAGGACCAAGGAAGAG
ATTCCGGGGTGGAAGAGGAGGAGGCGGTCCAGCTCGGTGGTGGCCGGCGAGATGTCCGGCTGCAGTGGCA
AGTCTCACCGGAGGACCTCCCTGCCCTGCATACCCAGGGAGCAGCTCATGGGCCATTCAGAATGGGACCA
CAAGAGAGGGCCACGAGGATCCCAGTCAGGAACCAGCATCACTGTGGATATTGCTGTGATGGGTGAGGCC
CATGGCCTCATTACCGACCTCCTGGCCGACCCTTCTCTGCCCCCGAATGTGTGTACATCCTTGAGGGCCG
TAAGCAACTTGCTCAGCACCCAGCTCACCTTCCAGGCCATCCACAAGCCCAGAGTGAACCCCACCGTGAC
CTTCAGTGAGAACTATACCTGCTCGGACTCTGAGGAAGGCTTGGAGAAAGACAAGCAGGCCATTTCCAAG
CGCCTGAGAAGAAGTTTGCCTCCAGGCTTACTGAGAAGAGTCTCGTCAACTTGGACAACTACCACCTCTG
CCACAGGTCTGCCCACCTTGGAGCCTGCGCCAGTGCGGAGGGACCGCAGTGCCAGCATAAAGCCGCACGA
AGCCCCTTCACCCAGTGCTGTCAATCCTGACTCTTGGAATGCCCCAGGGTTGACGACTCTCACCAAAAGC
AGATCCTTCACTTCATCCTATGCTGTCTCTGCAGCTAACCATGTAAAAGCTAAAAAGCAAAACAGGCCAG
GTGGCCTTGCTAAAATTTCCCCCGTCCCCTCACCCTCCTCCTCGCCTCCCCAGGGATCACCTGCCAGCAG
TCCTGTCAGCAACAGTGCTTCACAACAGTTCCCAGAATCCCCTGAAGTAACCATCAAGCGAGGGCCTGGA
TCTCACAGGGCCTTAACTTACACCCAAAGTGCCCCTGACCTGTCCCCTCAGATCCCACCCCCGTCTGTCA
TATGTAGCAGCTGTGGCAGACCTTATTCGCAAGGGAATCCTGCTGATGGACCCTCAGAGAGAAGTGGCCC
AGCCATGCTGAAACCAAACAGAACAGATGACACTTCTCAAGTTACCTCCGATTATGAGACCAACAACAAC
AGTGACAGCAGTGACATTCTGCAGAATGAAGAGGAAGCTGAGTGCCAGAGAGAACCCCAGAGGAAAGCAT
CGGCTTGTGGCACCTATACTTCCCAGACCATGATCTTCCTGGACAAACCAATTCTTGCTCCAGAACCCCT
GGTCATGGATAACCTGGACTCAATTATGGATCAGTTGAACACCTGGAATTTTCCAATTTTTGATTTAATG
GAAAATATAGGAAGAAAATGTGGCCGTATTCTGAGCCAGGTATCATACAGACTGTTTGAAGACATGGGGC
TCTTTGAAGCCTTTAAAATCCCGGTTAGGGAGTTTATGAATTACTTTCATGCTTTGGAGATCGGATACAG
GGACATTCCTTATCATAACAGAATCCATGCCACCGATGTTCTACACGCTGTGTGGTATCTCACAACACAG
CCGATTCCTGGCCTCCCAAGTGTGATTGGTGATCACGGCTCAGCAAGCGACTCCGATTCTGACAGTGGAT
TTACACACGGACACATGGGATATGTGTTTTCAAAAATGTATCACGTGCCAGATGACAAATATGGATGCCT
GTCTGGGAATATTCCAGCCCTAGAGTTGATGGCTCTGTACGTTGCTGCAGCCATGCATGACTACGATCAC
CCAGGGAGGACAAATGCCTTCCTGGTTGCCACTAGTGCCCCTCAGGCGGTGCTATACAACGACCGTTCTG
TTCTGGAGAACCATCACGCCGCTGCAGCCTGGAATCTCTTCATGTCCCGGCCAGAGTATAACTTCTTAGT
TAACCTGGACCACGTGGAATTCAAGCACTTCCGCTTCCTAGTCATTGAAGCGATTTTGGCTACTGACCTG
AAGAAACACTTTGACTTTGTAGCCAAATTTAACGCCAAGGTAAACGATGATGTCGGGATAGATTGGACCA
ATGAAAACGACCGTCTCCTGGTGTGTCAGATGTGTATAAAGCTGGCTGACATCAACGGGCCTGCTAAATG
CAAAGAACTCCACCTGCGGTGGACAGAGGGCATCGCCAGCGAGTTTTATGAGCAGGGCGATGAAGAAGCC
AGCCTCGGCTTGCCCATAAGTCCCTTTATGGACCGCTCTGCCCCGCAGCTGGCCAATCTTCAGGAATCCT
TTATCTCACACATCGTGGGTCCTCTCTGCCACTCCTATGACTCTGCGGGACTCATGCCAGGAAAATGGGT
AGATGACAGTGATGATTCCGGAGACACCGATGACCCGGAAGAAGAGGAGGAAGAGGCTGAAACACCACAC
GAGGACGAAGCCTGTGAAAGCAGTATAGCTCCCCGAAAGAAAAGTTTCAAAAGAAGGAGAATCTACTGCC
AAATAACTCAGCACCTTCTGCAGAACCACATGATGTGGAAGAAAGTGATTGAAGAGGAACAGTGTTTATC
AGGCACAGAGAACCAGTCCCTGGACCAGGTCCCTCTGCAGCATCCCTCAGAGCAGATCCAGGCTATCAAG
GAGGAAGAGGAAGAGAAGGGGAAGCCAAGAGCAGAGGAGACCCTGGCTCCACAGCCAGACCTGTGA

Translation (1141 aa):
MAVRGEAAQDLAKPGLGGASPARVARGNHRHRGESSPSPRGSGCCWRALALQPLRRSPQLSSALCAGSLS
VLLALLVRLVGGEVGGELEKSQEAAAEEEEEEGARGGVFPGPRGGAPGGGAQLSPWLQPAALLFSLLCAF
FWMGLCLLRAGVRLPLAVALLAACCAGEALVQLSLGVGDGRLLSLPAAGVLLSCLGGATWLVLRLRLGVL
MVAWTSVLRTVALVSLERFKVAWRPYLAYLAAVLGLLLARYAEQILPQCSGPAPPRERFGSQLSARTKEE
IPGWKRRRRSSSVVAGEMSGCSGKSHRRTSLPCIPREQLMGHSEWDHKRGPRGSQSGTSITVDIAVMGEA
HGLITDLLADPSLPPNVCTSLRAVSNLLSTQLTFQAIHKPRVNPTVTFSENYTCSDSEEGLEKDKQAISK
RLRRSLPPGLLRRVSSTWTTTTSATGLPTLEPAPVRRDRSASIKPHEAPSPSAVNPDSWNAPGLTTLTKS
RSFTSSYAVSAANHVKAKKQNRPGGLAKISPVPSPSSSPPQGSPASSPVSNSASQQFPESPEVTIKRGPG
SHRALTYTQSAPDLSPQIPPPSVICSSCGRPYSQGNPADGPSERSGPAMLKPNRTDDTSQVTSDYETNNN
SDSSDILQNEEEAECQREPQRKASACGTYTSQTMIFLDKPILAPEPLVMDNLDSIMDQLNTWNFPIFDLM
ENIGRKCGRILSQVSYRLFEDMGLFEAFKIPVREFMNYFHALEIGYRDIPYHNRIHATDVLHAVWYLTTQ
PIPGLPSVIGDHGSASDSDSDSGFTHGHMGYVFSKMYHVPDDKYGCLSGNIPALELMALYVAAAMHDYDH
PGRTNAFLVATSAPQAVLYNDRSVLENHHAAAAWNLFMSRPEYNFLVNLDHVEFKHFRFLVIEAILATDL
KKHFDFVAKFNAKVNDDVGIDWTNENDRLLVCQMCIKLADINGPAKCKELHLRWTEGIASEFYEQGDEEA
SLGLPISPFMDRSAPQLANLQESFISHIVGPLCHSYDSAGLMPGKWVDDSDDSGDTDDPEEEEEEAETPH
EDEACESSIAPRKKSFKRRRIYCQITQHLLQNHMMWKKVIEEEQCLSGTENQSLDQVPLQHPSEQIQAIK
EEEEEKGKPRAEETLAPQPDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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