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Report for CCDS23732.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23732.1 Public Mus musculus 10 Tcf21 23 108 98 CCDS HistoryNCBI Gene:21412Re-query CCDS DB by CCDS ID:23732.1Re-query CCDS DB by GeneID:21412See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23732.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049930.8 ENSMUSP00000053178.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049930.8Link to Ensembl Protein Viewer:ENSMUSP00000053178.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049930Re-query CCDS DB by Protein ID:ENSMUSP00000053178
Original member Current member NCBI NM_011545.2 NP_035675.1 Accepted alive Link to Nucleotide Sequence:NM_011545.2Link to Protein Sequence:NP_035675.1Re-query CCDS DB by Nucleotide ID:NM_011545Re-query CCDS DB by Protein ID:NP_035675Link to BLAST:NP_035675.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035675.1 179 O35437 179 100% 0 0

Chromosomal Locations for CCDS 23732.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 22817737 22817826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 22819454 22819903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (540 nt):
ATGTCCACTGGCTCCCTCAGCGATGTAGAAGACCTTCAAGAGGTGGAGATGCTGGACTGTGACTCCCTGA
AAGTGGACTCCAACAAGGAGTTTGGAACTTCCAACGAGAGCACCGAGGAGGGCTCCAACTGCGAGAACGG
GTCTCCACAGAAGGGTCGCGGTGGCCTAGGCAAGAGGAGGAAGGCGCCCACTAAGAAAAGCCCGCTCAGC
GGGGTCAGCCAGGAGGGCAAGCAGGTCCAGCGCAACGCGGCCAATGCTCGTGAGCGGGCCCGCATGCGGG
TGCTGAGCAAGGCCTTCTCCAGGCTCAAGACCACCCTGCCCTGGGTGCCCCCGGACACCAAGCTCTCCAA
GCTGGACACTCTCAGGCTGGCGTCCAGCTACATCGCTCACTTAAGGCAGATCCTGGCCAACGACAAGTAC
GAGAACGGTTACATTCACCCAGTCAACCTGACGTGGCCCTTTATGGTGGCCGGCAAACCAGAGAATGACC
TGAAGGAAGTGGTGACCGCCAACCGCTTGTGTGGAACTACAGCATCCTGA

Translation (179 aa):
MSTGSLSDVEDLQEVEMLDCDSLKVDSNKEFGTSNESTEEGSNCENGSPQKGRGGLGKRRKAPTKKSPLS
GVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKY
ENGYIHPVNLTWPFMVAGKPENDLKEVVTANRLCGTTAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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