NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18808.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18808.1 Public Mus musculus 4 Tex46 23 108 98 CCDS HistoryNCBI Gene:67663Re-query CCDS DB by CCDS ID:18808.1Re-query CCDS DB by GeneID:67663See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18808.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046647.2 ENSMUSP00000038976.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046647.2Link to Ensembl Protein Viewer:ENSMUSP00000038976.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000046647Re-query CCDS DB by Protein ID:ENSMUSP00000038976
Original member Current member NCBI NM_026300.2 NP_080576.1 Accepted alive Link to Nucleotide Sequence:NM_026300.2Link to Protein Sequence:NP_080576.1Re-query CCDS DB by Nucleotide ID:NM_026300Re-query CCDS DB by Protein ID:NP_080576Link to BLAST:NP_080576.1

Chromosomal Locations for CCDS 18808.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 136610499 136610687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136612795 136613103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGTTGGGGGAACTAATCTTTCTTCTGAGGAGTCTCCACGGGTTCCTTGCTTCTTCTGGCCCCATAGGAG
CTGCCTTGGCTTGGTTGATAAGCTTTAAACCCATCTTGTTTGCCTTCCTCCTCCTTCTGCTGTTGCTGAG
CAACTGGCTGGTCAAACAAGAACACAATTTGGCTCCCTCCCCACCCCAGGAGGAGGCAGAAACAACAACA
GCTCCAGAAGTCCATCCCAAAAACAACGTCAAAAACAAGGAAGAGTTGGAGAAAATTAATGCTTGCTTCG
CCCTCCAGGATAAGGTCCTTGAACGGCTGATGTTCAGTGAGATGAAGCTGAAAGCCTTGGAAAATCAGGT
GTTCGTCATATGGAATAAAATAAATCGCCGCCGGTGGAGCAGCAGACAACGGAACTTCTCCAGGAGGAGG
CACAGGTCGAGAAGGCATGACTCCACATTCTCCACCTTATCTAAATGTACTACCGTCACCCCCACGGAAT
GTGACTGA

Translation (165 aa):
MLGELIFLLRSLHGFLASSGPIGAALAWLISFKPILFAFLLLLLLLSNWLVKQEHNLAPSPPQEEAETTT
APEVHPKNNVKNKEELEKINACFALQDKVLERLMFSEMKLKALENQVFVIWNKINRRRWSSRQRNFSRRR
HRSRRHDSTFSTLSKCTTVTPTECD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH