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Report for CCDS26679.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26679.1 Public Mus musculus 13 Ckmt2 23 108 98 CCDS HistoryNCBI Gene:76722Re-query CCDS DB by CCDS ID:26679.1Re-query CCDS DB by GeneID:76722See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26679.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022122.3 ENSMUSP00000022122.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022122.3Link to Ensembl Protein Viewer:ENSMUSP00000022122.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000022122Re-query CCDS DB by Protein ID:ENSMUSP00000022122
Original member NCBI NM_198415.3 NP_940807.1 Updated not alive Link to Nucleotide Sequence:NM_198415.3Link to Protein Sequence:NP_940807.1Re-query CCDS DB by Nucleotide ID:NM_198415Re-query CCDS DB by Protein ID:NP_940807
Current member NCBI NM_198415.4 NP_940807.1 Accepted alive Link to Nucleotide Sequence:NM_198415.4Link to Protein Sequence:NP_940807.1Re-query CCDS DB by Nucleotide ID:NM_198415Re-query CCDS DB by Protein ID:NP_940807Link to BLAST:NP_940807.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940807.1 419 Q6P8J7 419 100% 0 0

Chromosomal Locations for CCDS 26679.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 91853529 91853648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 91855738 91855863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 91858211 91858345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 91859195 91859318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 91859859 91859944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 91861138 91861359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 91861753 91861848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 91863139 91863337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 91865182 91865333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGGCCAGTGCCTTCTCAAAGTTGCTAACTGGCCGAAATGCATCTCTGCTGTTTACTACACTGGGAACCA
GTGCCCTGACCACTGGTTACCTGCTGAATAGGCAGAAGGTATCTGCTGATGCCCGGGAACAGCACAAGCT
CTTTCCCCCAAGTGCGGACTACCCTGACCTTCGAAAACATAACAACTGCATGGCTGAGTGCCTCACCCCC
ACCATCTATGCCAAACTCCGAAACAAGATGACACCCAGTGGCTATACCCTGGACCAGTGCATCCAAACTG
GAGTGGACAACCCCGGCCACCCCTTCATTAAGACTGTGGGCATGGTGGCTGGTGATGAGGAGTCGTATGA
GGTATTTGCTGACCTTTTTGATCCTGTCATCAAACTAAGGCACAATGGCTATGACCCTAGGGTGATGAAG
CATCCTACGGACCTGGATGCATCCAAGATTACTCACGGGCAGTTTGATGAGCGCTATGTGTTGTCCTCTC
GGGTACGCACTGGCCGAAGCATCCGCGGGCTGAGCCTGCCTCCAGCCTGCTCCCGAGCAGAGAGAAGGGA
GGTGGAGAATGTGGCCATTACTGCCCTGGAGGGCCTGAAGGGCGATCTGGCTGGCCGCTACTACAAGCTG
TCTGAGATGACGGAGCAGGATCAGCAACGTCTCATCGATGACCACTTTCTGTTTGATAAGCCAGTGTCCC
CTTTACTAACATGTGCTGGAATGGCCCGTGACTGGCCTGATGCCAGGGGAATCTGGCATAATTATGACAA
GACATTTCTCATCTGGATAAATGAGGAAGACCACACCAGGGTGATCTCAATGGAAAAGGGAGGCAATATG
AAACGCGTATTTGAGAGATTCTGTCGTGGACTAAAGGAAGTGGAACGATTAATCCAGGAACGAGGCTGGG
AGTTCATGTGGAATGAGCGTCTGGGATACATTTTGACTTGCCCCTCGAACCTCGGAACTGGATTGCGAGC
TGGTGTCCACGTTAGGATCCCGAAGCTCAGCAAGGATCCACGCTTTTCTAAGATCTTGGAGAACCTGCGG
CTCCAAAAGCGTGGCACAGGTGGTGTGGACACTGCTGCAGTGGCAGATGTGTACGATATTTCCAACATAG
ATCGGATCGGCAGATCAGAGGTTGAGCTTGTTCAGATTGTTATTGACGGAGTCAACTACCTGGTGGATTG
TGAAAAGAAGCTGGAGAGAGGCCAAGACATCAAGGTGCCCCCTCCTCTGCCTCAGTTTGGCAGGAAGTGA

Translation (419 aa):
MASAFSKLLTGRNASLLFTTLGTSALTTGYLLNRQKVSADAREQHKLFPPSADYPDLRKHNNCMAECLTP
TIYAKLRNKMTPSGYTLDQCIQTGVDNPGHPFIKTVGMVAGDEESYEVFADLFDPVIKLRHNGYDPRVMK
HPTDLDASKITHGQFDERYVLSSRVRTGRSIRGLSLPPACSRAERREVENVAITALEGLKGDLAGRYYKL
SEMTEQDQQRLIDDHFLFDKPVSPLLTCAGMARDWPDARGIWHNYDKTFLIWINEEDHTRVISMEKGGNM
KRVFERFCRGLKEVERLIQERGWEFMWNERLGYILTCPSNLGTGLRAGVHVRIPKLSKDPRFSKILENLR
LQKRGTGGVDTAAVADVYDISNIDRIGRSEVELVQIVIDGVNYLVDCEKKLERGQDIKVPPPLPQFGRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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