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Report for CCDS23495.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23495.1 Public Mus musculus 9 Tusc2 23 108 98 CCDS HistoryNCBI Gene:80385Re-query CCDS DB by CCDS ID:23495.1Re-query CCDS DB by GeneID:80385See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23495.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010198.4 ENSMUSP00000010198.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010198.4Link to Ensembl Protein Viewer:ENSMUSP00000010198.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000010198Re-query CCDS DB by Protein ID:ENSMUSP00000010198
Original member Current member NCBI NM_019742.4 NP_062716.1 Accepted alive Link to Nucleotide Sequence:NM_019742.4Link to Protein Sequence:NP_062716.1Re-query CCDS DB by Nucleotide ID:NM_019742Re-query CCDS DB by Protein ID:NP_062716Link to BLAST:NP_062716.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062716.1 110 Q9WVF8 110 100% 0 0

Chromosomal Locations for CCDS 23495.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 107563387 107563532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107564576 107564696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107564847 107564912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (333 nt):
ATGGGCGCCAGCGGCTCCAAAGCTCGGGGCCTCTGGCCCTTTGCCTCCACTCCGGGGGGCGGCGGCCCAG
AGGCGGCAGGCTCCGAGCAGTCTCTGGTGCGGTCTCGAGCCCGAGCAGTGCCTCCCTTCGTATTCACGCG
CCGCGGCTCCATGTTCTACGATGAAGATGGAGATCTGGCTCACGAATTCTATGAGGAGACAATCGTCACC
AAGAATGGGCAGAAGCGAGCCAAGCTGAGGCGGGTACATAAGAATCTGATTCCTCAGGGCATCGTGAAGC
TGGATCCTCCCCGAATCCACGTGGATTTCCCCGTGATCCTCTATGAAGTATGA

Translation (110 aa):
MGASGSKARGLWPFASTPGGGGPEAAGSEQSLVRSRARAVPPFVFTRRGSMFYDEDGDLAHEFYEETIVT
KNGQKRAKLRRVHKNLIPQGIVKLDPPRIHVDFPVILYEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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