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Report for CCDS26147.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26147.1 Public Mus musculus 12 Serpina3b 23 108 98 CCDS HistoryNCBI Gene:271047Re-query CCDS DB by CCDS ID:26147.1Re-query CCDS DB by GeneID:271047See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26147.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085052.2 ENSMUSP00000082127.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085052.2Link to Ensembl Protein Viewer:ENSMUSP00000082127.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000085052Re-query CCDS DB by Protein ID:ENSMUSP00000082127
Original member Current member NCBI NM_173024.3 NP_766612.1 Accepted alive Link to Nucleotide Sequence:NM_173024.3Link to Protein Sequence:NP_766612.1Re-query CCDS DB by Nucleotide ID:NM_173024Re-query CCDS DB by Protein ID:NP_766612Link to BLAST:NP_766612.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766612.1 420 Q8BYY9 420 100% 0 0

Chromosomal Locations for CCDS 26147.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 104130462 104131098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104132865 104133138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104134072 104134222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104138629 104138829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGGCCTTCATTGCAGCTCTAGGGCTCTTAATGGCTGAGATCTGCCCTGCTGTCATCTGCTGCTCAGATG
GCACACTAGGAATGCACAATGCAGTCCAGAAAGGCCAGGACACTCAAAAACAACTGGACAGTTTAACACT
GGCTTCCATCAACACTGACTTTGCCTTCAGTTTCTACAAGGAGCTAGCTTTGAAGAATCCACATAAAAAT
ATTGCCTTCTCTCCCTTTGGCATCGCAACTGCTCTGAACTCCTTGACTCTGGGAGCAAAGGGCAACACCT
TGGAAGAGATTCTAGAAGTTCTTAAATTCAATCTGACAGAAACATCTGAGGCAGACATCCACCAGGGCTT
TAAGCACCTCCTACAGAGGCTCAGCCATCCAGGGGACCAGGTACAGATCAGGACAGGCAATGCCCTGTTT
GTTGAAAAGCACCTGCAGATCCTGGCAGAGTTCAAGGAGAAGGCAAGGGCTCTGTACCACACTGAGGTCT
TCACAGCCAACTTCCAGCAGCCTCATGAAGCTATGAAGCTCATCAATAGCTATATGAGCAATCAGACCCA
GGGGAAGATCAAGGAACTGGTCTCAGACATGGATGGCAATACATCTATGGTGATAGTGAATGATCTCTTT
TTTAAAGCGGAATGGATGGTGCCTTTTAACTCTGATGACACGTTCATGGGAAAATTCATAGTGGACAGGA
GTAGGCATGTGAAAGTGCCAATGATGAAAACTAAGAACCTGAGGACACCCTACTTCCGGGATGAAGAGCT
GAAATGCACTGTGGTGGAGCTGAACTACAAAGGCAATGGCAAGGCCATGTTCATCCTCCCTGACCAGGGC
AAGATGCAGCAGGTGGAAGCCAGCTTACAACCAGGGACCCTGAAGAAGTGGAGGAAATCTTTGAGGCCCA
GGAAGATAAAAGAGCTCCACTTACCCAAGTTCTCCTTATCCCAACACTACAACCTAGAAGACATCCTTCC
AGAGCTGGGTATCAGGGAACTCTTCTCCACACAGGCTGACCTTTCTGGCATCACAGGAGTGAAGAACATA
ACAGTCTCTGAGATGATCCACAGCACTGAGCTGGACATGACTGAGAAAGGCACAGAAGGAGATGCAATCA
CAATAGTCGGATACAACTTCATGTCTGCAAAACTTAAACCTGTGTTTGTTAAATTTGAGGACCAATTCCT
GTACATTGTTTTAGATCAAGGTGATTTGTGGATCCATGTAATGGGCAAGGTTATCAACCCCTCAGAAAAG
TAG

Translation (420 aa):
MAFIAALGLLMAEICPAVICCSDGTLGMHNAVQKGQDTQKQLDSLTLASINTDFAFSFYKELALKNPHKN
IAFSPFGIATALNSLTLGAKGNTLEEILEVLKFNLTETSEADIHQGFKHLLQRLSHPGDQVQIRTGNALF
VEKHLQILAEFKEKARALYHTEVFTANFQQPHEAMKLINSYMSNQTQGKIKELVSDMDGNTSMVIVNDLF
FKAEWMVPFNSDDTFMGKFIVDRSRHVKVPMMKTKNLRTPYFRDEELKCTVVELNYKGNGKAMFILPDQG
KMQQVEASLQPGTLKKWRKSLRPRKIKELHLPKFSLSQHYNLEDILPELGIRELFSTQADLSGITGVKNI
TVSEMIHSTELDMTEKGTEGDAITIVGYNFMSAKLKPVFVKFEDQFLYIVLDQGDLWIHVMGKVINPSEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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