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Report for CCDS7990.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7990.1 Public Homo sapiens 11 MS4A8 24 110 108 CCDS HistoryNCBI Gene:83661Re-query CCDS DB by CCDS ID:7990.1Re-query CCDS DB by GeneID:83661See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7990.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300226.7 ENSP00000300226.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000300226.7Link to Ensembl Protein Viewer:ENSP00000300226.2Re-query CCDS DB by Nucleotide ID:ENST00000300226Re-query CCDS DB by Protein ID:ENSP00000300226
Original member Current member NCBI NM_031457.2 NP_113645.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031457.2Link to Protein Sequence:NP_113645.1Re-query CCDS DB by Nucleotide ID:NM_031457Re-query CCDS DB by Protein ID:NP_113645Link to BLAST:NP_113645.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113645.1 250 Q9BY19 250 100% 0 0

Chromosomal Locations for CCDS 7990.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60700861 60701079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60703378 60703500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60706988 60707047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60708650 60708781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60715021 60715134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60715310 60715414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGAATTCGATGACTTCAGCAGTTCCGGTGGCCAATTCTGTGTTGGTGGTGGCACCCCACAATGGTTATC
CTGTGACCCCAGGAATTATGTCTCACGTGCCCCTGTATCCAAACAGCCAGCCGCAAGTCCACCTAGTTCC
TGGGAACCCACCTAGTTTGGTGTCGAATGTGAATGGGCAGCCTGTGCAGAAAGCTCTGAAAGAAGGCAAA
ACCTTGGGGGCCATCCAGATCATCATTGGCCTGGCTCACATCGGCCTCGGCTCCATCATGGCGACGGTTC
TCGTAGGGGAATACCTGTCTATTTCATTCTACGGAGGCTTTCCCTTCTGGGGAGGCTTGTGGTTTATCAT
TTCAGGATCTCTCTCCGTGGCAGCAGAAAATCAGCCATATTCTTATTGCCTGCTGTCTGGCAGTTTGGGC
TTGAACATCGTCAGTGCAATCTGCTCTGCAGTTGGAGTCATACTCTTCATCACAGATCTAAGTATTCCCC
ACCCATATGCCTACCCCGACTATTATCCTTACGCCTGGGGTGTGAACCCTGGAATGGCGATTTCTGGCGT
GCTGCTGGTCTTCTGCCTCCTGGAGTTTGGCATCGCATGCGCATCTTCCCACTTTGGCTGCCAGTTGGTC
TGCTGTCAATCAAGCAATGTGAGTGTCATCTATCCAAACATCTATGCAGCAAACCCAGTGATCACCCCAG
AACCGGTGACCTCACCACCAAGTTATTCCAGTGAGATCCAAGCAAATAAGTAA

Translation (250 aa):
MNSMTSAVPVANSVLVVAPHNGYPVTPGIMSHVPLYPNSQPQVHLVPGNPPSLVSNVNGQPVQKALKEGK
TLGAIQIIIGLAHIGLGSIMATVLVGEYLSISFYGGFPFWGGLWFIISGSLSVAAENQPYSYCLLSGSLG
LNIVSAICSAVGVILFITDLSIPHPYAYPDYYPYAWGVNPGMAISGVLLVFCLLEFGIACASSHFGCQLV
CCQSSNVSVIYPNIYAANPVITPEPVTSPPSYSSEIQANK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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