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Report for CCDS35210.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35210.1 Public Homo sapiens X SCML1 24 110 108 CCDS HistoryNCBI Gene:6322Re-query CCDS DB by CCDS ID:35210.1Re-query CCDS DB by GeneID:6322See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35210.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380041.8 ENSP00000369380.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380041.8Link to Ensembl Protein Viewer:ENSP00000369380.3Re-query CCDS DB by Nucleotide ID:ENST00000380041Re-query CCDS DB by Protein ID:ENSP00000369380
Original member Current member NCBI NM_001037540.3 NP_001032629.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001037540.3Link to Protein Sequence:NP_001032629.1Re-query CCDS DB by Nucleotide ID:NM_001037540Re-query CCDS DB by Protein ID:NP_001032629Link to BLAST:NP_001032629.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032629.1 329 Q9UN30-3 329 100% 0 0

Chromosomal Locations for CCDS 35210.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 17744187 17744219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 17745456 17745539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 17746018 17746098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 17749400 17749504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 17749894 17750293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 17751815 17751966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 17753258 17753392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGATGTCTAACAGCTCCAGTGAAATCGATGTGATAAAAACAAGAATACCTACTTACGATGAAGATGACA
ACACTATTCTTTATGCGTATGAAACAAAACCTGAATTTGTCAATAAAGAACCGAATATTGTATCTGACGC
ATCCTGTAATACTGAAGAGCAACTGAAGACAGTTGATGATGTCCTTATTCATTGCCAGGTTATATATGAT
GCTCTGCAAAACCTGGATAAGAAGATTGATGTGATTCGTAGAAAGGTTTCAAAAATCCAACGTTTCCATG
CGAGATCCCTGTGGACAAATCATAAGCGATATGGATATAAAAAGCATTCTTACCGGCTTGTTAAAAAGCT
TAAACTCCAGAAAATGAAGAAAAATGAGGTTTACGAGACATTCTCCTACCCTGAAAGTTACAGCCCCACT
TTACCAGTGTCAAGGCGTGAGAATAATTCCCCGAGCAACCTTCCAAGGCCATCCTTTTGCATGGAAGAAT
ACCAGCGAGCTGAGCTGGAGGAGGACCCGATCCTCAGCCGCACTCCGAGTCCAGTGCATCCCTCAGATTT
CTCTGAGCATAATTGTCAGCCGTATTATGCATCTGATGGTGCAACGTATGGTTCTTCTTCAGGGCTCTGC
CTTGGCAACCCTCGGGCTGACAGCATCCACAACACTTACTCAACTGACCATGCTTCTGCAGCACCACCTT
CAGTTACAAGGTCACCAGTTGAAAATGACGGTTACATAGAGGAAGGAAGCATCACTAAGCACCCTTCAAC
CTGGTCGGTGGAAGCAGTGGTCCTATTTCTAAAACAAACAGATCCTCTTGCATTATGCCCTCTTGTCGAC
CTCTTCAGAAGCCATGAAATTGACGGGAAGGCTCTGCTCCTACTCACGAGTGACGTGTTGCTGAAGCACT
TGGGGGTGAAGCTGGGAACGGCTGTGAAGCTATGCTACTACATTGACCGACTTAAACAAGGAAAATGCTT
TGAAAATTGA

Translation (329 aa):
MMSNSSSEIDVIKTRIPTYDEDDNTILYAYETKPEFVNKEPNIVSDASCNTEEQLKTVDDVLIHCQVIYD
ALQNLDKKIDVIRRKVSKIQRFHARSLWTNHKRYGYKKHSYRLVKKLKLQKMKKNEVYETFSYPESYSPT
LPVSRRENNSPSNLPRPSFCMEEYQRAELEEDPILSRTPSPVHPSDFSEHNCQPYYASDGATYGSSSGLC
LGNPRADSIHNTYSTDHASAAPPSVTRSPVENDGYIEEGSITKHPSTWSVEAVVLFLKQTDPLALCPLVD
LFRSHEIDGKALLLLTSDVLLKHLGVKLGTAVKLCYYIDRLKQGKCFEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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