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Report for CCDS29577.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29577.1 Public Mus musculus 19 Saxo4 23 108 98 CCDS HistoryNCBI Gene:67752Re-query CCDS DB by CCDS ID:29577.1Re-query CCDS DB by GeneID:67752See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29577.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038842.4 ENSMUSP00000035684.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038842.4Link to Ensembl Protein Viewer:ENSMUSP00000035684.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000038842Re-query CCDS DB by Protein ID:ENSMUSP00000035684
Original member Current member EBI ENSMUST00000237522.1 ENSMUSP00000158578.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237522.1Link to Ensembl Protein Viewer:ENSMUSP00000158578.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237522Re-query CCDS DB by Protein ID:ENSMUSP00000158578
Original member Current member NCBI NM_001368184.1 NP_001355113.1 Accepted alive Link to Nucleotide Sequence:NM_001368184.1Link to Protein Sequence:NP_001355113.1Re-query CCDS DB by Nucleotide ID:NM_001368184Re-query CCDS DB by Protein ID:NP_001355113Link to BLAST:NP_001355113.1
Original member Current member NCBI NM_133689.2 NP_598450.1 Accepted alive Link to Nucleotide Sequence:NM_133689.2Link to Protein Sequence:NP_598450.1Re-query CCDS DB by Nucleotide ID:NM_133689Re-query CCDS DB by Protein ID:NP_598450Link to BLAST:NP_598450.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355113.1 427 Q148A4 427 99.7658% 0 1
NP_598450.1 427 Q148A4 427 99.7658% 0 1

Chromosomal Locations for CCDS 29577.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10474499 10474568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10474931 10475101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10477028 10477122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10477205 10477318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10477525 10477611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10477715 10477774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10478197 10478309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10478625 10478688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10479470 10479598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10481284 10481437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10481703 10481820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10482233 10482341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1284 nt):
ATGATGGGGAAACTCCCTCTTGGGGTTGTCTCTCCATATGTGAAGATGAGTTCGGGGGGATGCTCTGACC
CTCTGAAGTTTTATGCTACCAGCTACTGTACAGCCTATGGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAG
CCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTG
GACAATCCTGCCATAGGGCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCC
TAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGA
AAAACTCAACCCTGGACCACATTCCAAGGAGGTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCT
CAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGG
AGTGGGAGAACTCGCACTATGGTCCACGCTTCATGACTTCTGAATACAATTCCAAGTATATCAAGGAGTC
TCCAAACCACCCAGATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAG
TCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCTGTCCTCCATCCAG
GACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAGGGAAGTGATTTCCTCCCTGTGCT
GTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGAGTGCCT
ACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAA
ATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAGGAGCCCACAGGGTTCACTCTTAACAACCCCAG
CTATGTTCGGAGTTCCTATGAACAGGACAGAGATCAGCGGTACCTGACCACCTACAACCAAGGGTACTTC
GAGAATATCCCCAAGGGGCTGGATCGAGAAGGCTGGACTCGAGGTGGCATCCAGCCCCAGAAAGCAGGAG
CCTACGCCCTCAGTGAGCTGAATAACCATACCCTCATGGACTCCACCCCAAATCCCACGGAGACCCTGAG
GCACCTGCACCCCCATGTGGGAAGAACCCTGGCTTCAGTTGACCCCTTCTATCGAGACATGCCTCATAGC
AGCCGCTACCCAGCTTCCAGTTGA

Translation (427 aa):
MMGKLPLGVVSPYVKMSSGGCSDPLKFYATSYCTAYGREEFKPRLGSHVGTGYKSNYRPLVSYQPHLDTL
DNPAIGQQIRDTSKSVTSQSYSPLEVPDGKQPLPWNLHQTTSSYGREKLNPGPHSKEVRKVHFDTQDHGP
QTITGLEPKEVPLIHQQQGKGSTEWENSHYGPRFMTSEYNSKYIKESPNHPDLLLKKTIGSKEETGFTEE
STKNPIVFQPPSQAFPGDPVLHPGRSITKSDYLPVTHPQGSDFLPVLSRGSDRDTGFSRVNERTLNPRVP
TPAPQSASMSHRSYQPPQRMQQTNVALLGRESVGNKEPTGFTLNNPSYVRSSYEQDRDQRYLTTYNQGYF
ENIPKGLDREGWTRGGIQPQKAGAYALSELNNHTLMDSTPNPTETLRHLHPHVGRTLASVDPFYRDMPHS
SRYPASS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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