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Report for CCDS50073.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50073.1 Public Mus musculus 17 Psmb8 23 108 98 CCDS HistoryNCBI Gene:16913Re-query CCDS DB by CCDS ID:50073.1Re-query CCDS DB by GeneID:16913See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50073.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025196.8 ENSMUSP00000025196.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025196.8Link to Ensembl Protein Viewer:ENSMUSP00000025196.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000025196Re-query CCDS DB by Protein ID:ENSMUSP00000025196
Original member Current member NCBI NM_010724.2 NP_034854.2 Accepted alive Link to Nucleotide Sequence:NM_010724.2Link to Protein Sequence:NP_034854.2Re-query CCDS DB by Nucleotide ID:NM_010724Re-query CCDS DB by Protein ID:NP_034854Link to BLAST:NP_034854.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034854.2 276 P28063 276 100% 0 0

Chromosomal Locations for CCDS 50073.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34198399 34198545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34199233 34199380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34199571 34199682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34200141 34200270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34200711 34200915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34201178 34201266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGGCGTTACTGGATCTGTGCGGTGCCGCTCGGGGGCAGCGGCCCGAGTGGGCTGCCCTGGATGCGGGAA
GCGGGGGTCGCTCGGACCCGGGACACTACAGTTTCTCCGCGCAAGCTCCGGAGCTCGCACTTCCCCGGGG
AATGCAGCCCACCGCATTCCTGAGGTCCTTTGGTGGTGACCAGGAAAGGAATGTTCAAATTGAGATGGCC
CACGGCACAACCACACTCGCCTTCAAGTTCCAGCATGGCGTCATCGTGGCTGTGGACTCCAGGGCCACTG
CAGGGAGTTACATTAGCTCCTTAAGGATGAACAAAGTGATCGAGATTAACCCTTACCTGCTTGGCACCAT
GTCTGGTTGTGCAGCCGACTGCCAGTACTGGGAGAGGCTGTTGGCCAAGGAGTGCAGGTTGTATTATCTT
CGGAATGGGGAACGCATCTCCGTGTCTGCAGCATCCAAGCTGCTTTCCAACATGATGCTGCAGTACCGGG
GGATGGGCCTCTCCATGGGCAGCATGATCTGTGGCTGGGACAAGAAGGGACCAGGACTTTACTACGTAGA
TGACAATGGGACTCGGCTCTCGGGACAGATGTTTTCCACTGGCAGCGGGAACACCTATGCCTATGGGGTG
ATGGACAGTGGTTACCGGCAGGACCTCAGTCCTGAAGAGGCCTACGACCTTGGCCGCAGAGCTATTGCTT
ATGCTACCCACAGAGACAACTATTCTGGAGGAGTCGTCAACATGTACCACATGAAGGAAGACGGTTGGGT
GAAAGTGGAGAGTTCCGATGTCAGTGACCTGCTGTACAAGTACGGAGAGGCCGCTCTGTGA

Translation (276 aa):
MALLDLCGAARGQRPEWAALDAGSGGRSDPGHYSFSAQAPELALPRGMQPTAFLRSFGGDQERNVQIEMA
HGTTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYL
RNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGNTYAYGV
MDSGYRQDLSPEEAYDLGRRAIAYATHRDNYSGGVVNMYHMKEDGWVKVESSDVSDLLYKYGEAAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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