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Report for CCDS27447.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27447.1 Public Mus musculus 15 Zfpm2 23 108 98 CCDS HistoryNCBI Gene:22762Re-query CCDS DB by CCDS ID:27447.1Re-query CCDS DB by GeneID:22762See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27447.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053467.5 ENSMUSP00000051335.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053467.5Link to Ensembl Protein Viewer:ENSMUSP00000051335.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000053467Re-query CCDS DB by Protein ID:ENSMUSP00000051335
Original member Current member NCBI NM_011766.5 NP_035896.1 Accepted alive Link to Nucleotide Sequence:NM_011766.5Link to Protein Sequence:NP_035896.1Re-query CCDS DB by Nucleotide ID:NM_011766Re-query CCDS DB by Protein ID:NP_035896Link to BLAST:NP_035896.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035896.1 1151 Q8CCH7-1 1151 100% 0 0

Chromosomal Locations for CCDS 27447.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 40655544 40655583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40752896 40753054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40774045 40774146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40870528 40870646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40954693 40954804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41096059 41096265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41099287 41099511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41101085 41103576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3456 nt):
ATGTCCCGGCGAAAGCAGAGTAAACCCCGGCAGATCAAACGGCCGCTGGAAGATGCCATCGACGACGAGG
AAGAAGAGTGTCCGGTGGAGGAAGCCGAAGTCATCTCGAAAGGCGACTTTCCACTGGAGGGAAGCTTCCC
CGCAGGCTTTGAGCCCGAAAATCTGAGCTGCGAAGACGTGGAGTTCTTTTGTAACAAAGGTGATGACGAA
GGAATCCAGGAGCCAGCAGAATCAGATGGGGACAGCCATTCAGACAAACCAGGACAGCCTGGGGTAGAGA
CAGATGACTGGGATGGACCAGGAGAGCTAGAAGTGTTTCAGAGAGATGGAGAAAGGAAGATTCAGAGTCG
GCAGCAACTTCCGGTGGGAACAACCTGGGGCCCTTTTGCTGGGAAGATGGACTTGAACAATAATTCCTTG
AAGACGAAGGCTCAGGTCCCCATGGTGCTGACTGCTGGTCCTAAATGGCTTCTGGATGTGACATGGCAAG
GAGTGGAAGACAGCAAAAACAACTGCATTGTGTACAGCAAAGGGGGCCAACTTTGGTGCACCACAACGAA
GGCCATCTCAGAGGGTGAAGAGCTCGTCGCCTTTGTGGTGGACTTTGACTCAAGGCTACAAGCTGCTAGT
CACATGACTCTCACCGAAGGGATGTACCCTGCCCGCCTGCTGGACTCGATTCAGCTGCTTCCTCAGCAAG
CTGCCATGGCTTCTATTTTGCCTACAGCTATTGTCAATAAGGATATATTCCCTTGCAAGTCCTGTGGCAT
CTGGTACCGGAGCGAGCGGAACCTGCAAGCCCATTTGATGTACTACTGTAGTGGGAGGCAACGAGAAGCT
GCTCCAGTGTCAGAAGAAAATGAAGACAACTCGCATCAGGTTTCCAGCCTGTGCCCCTTCCCACAATGCA
CCAAGAGCTTTTCCAATGCCCGAGCTCTAGAAATGCACCTGAATTCACACAGTGGTGTGAAAATGGAAGA
GTTCCTGCCCCCTGGGGCGAGTTTAAAATGCACGGTCTGTAGCTACACTGCTGATTCTGTGATCAACTTC
CACCAACACCTGTTCTCGCATCTCACTCAAGCCGCCTTCCGATGCAACCACTGCCATTTTGGCTTTCAGA
CCCAGAGGGAGCTACTGCAGCACCAGGAGCTCCATGTCCCCAGTGGCAAACTTCCCAGAGAAAGTGACAT
GGAGCACTCTCCAAGTGGAACGGAAGACAGCTTACAGCCAGCCACAGACTTGTTGGCCAGAAGTGACCTC
TCCCAGAGCCAAAAGGCCATGCCGACTAAGGATGCAAGCTCAGACACAGAGCTGGACAAGTGTGAGAAAA
AGACTCAACTCTTCCTCACCAATCAGAGACCAGAGATCCAGCCTGCAGCCAACAAGCAAAACTTCTCTTA
CACAAAAATAAAGTCTGAGCCCTCCAGTCCCAGACTCGCCTCATCTCCAGTGCAACCCAACATCGGGCCC
TCTTTCCCTGTGGGACCTTTCCTGTCTCAGTTTGCTTTTCCCCAAGATATCACGATGGTCCCTCAGGCTT
CAGAGATCTTGGCGAAGATGTCCGAGCTGGTGCACCGTCGACTGAGGCATGGGAGTAGTAGCTACCCTCC
TGTGATTTACAGCCCTTTGATGCCCAAAGGGGCTACGTGCTTTGAGTGTAACATAACATTCAATAATTTG
GATAACTATCTAGTTCATAAAAAGCACTACTGCAGCAGCAGATGGCAGCAGATGGCCAAATCCCCTGAGT
TTCCAAGTGTTTCTGAAAAAATGCCTGAGGCTGTGAGTCCTAACACTGGCCAGACTTCCATAAACCTTCT
TAACCCAGCCGCTCATTCATCGGACCCAGAGAACCCACTCCTTCAAACATCCTGCATCAACTCTTCCACC
GTTTTAGATTTGATTGGGCCAAACGGGAAAGGCCATGAGAAGGACTTTTCCACTCAAGTCAAAAAGTTGC
CCACCTCCAACAGTAGTGACGACAAAATAAACGGAAAGCCTGTTGATGTGAAAAATCCCAGCGGTCCCTT
AGTGGATGGGGAAAGTGACCCAAATAAGACTACCTGTGAAGCTTGTAACATCACCTTTAGCAGGCATGAA
ACCTATATGGTCCACAAACAGTATTACTGTGCAACACGCCATGACCCTCCGCTAAAGAGGTCTGCTTCCA
ACAAAGTGCCGGCCATGCAGAGAACCATGCGCACACGCAAGCGAAGAAAGATGTACGAAATGTGCCTACC
TGAGCAGGAACAGCGGCCGCCCCTGGTCCAGCAGAGATTTCTTGATGTAGCCAACCTAAGCAATCCTTGT
AGCTCCACTCAAGAGCCCACCGAAGGGCTAGGAGAATGCTACCACCCAAGATGCGACATCTTCCCAGGAA
TTGTCTCTAAGCACTTGGAAACATCATTGGCCATGAACAAATGTGTTCCGGTTCCCAAGTGTGACACGAC
CCATTCCAATGTTTCCTGCTTGGAGATGGATGTCCCTATAGATCTCAGCAAAAAGTGTTTATCGCAGTCT
GAGCGGACGACAGCATCTCCTAAGAGGCTACTAGACTACCACGAGTGCACAGTGTGCAAGATCAGCTTCA
ATAAGGTCGAGAACTATCTGGCGCACAAGCAGAATTTCTGCCCTGTCACTGCACATCAGCGTAATGACCT
GGGTCAGCTTGATGGTAAAGTGTTTCCGAATCCAGAAAGTGAACGGAGCAGCCCTGAAGTCAGCTTTGAA
AGAAACATGATCAAATGTGAGAAGAATGGGAATCCAAAGCAACCATCTCCCAACGGAAATTTGTTTTCAT
CCCACTTGGCAACCTTGCAAGGCCTGAAAGTCTTCAGCGAAGCAGCTCAGCTCATTGCTACAAAAGAAGA
AAACAAACATTTGTTTCTTCCCCAATGCCTTTACCCTGGAGCAATAAAGAAGACAAAAGGAGCTGACCAA
CTTTCTCCATACTATGGGATAAAGCCAAGCGATTATATCGCCAGTTCTCTTGTCATCCACAACACTGACG
TCGAACAAAGCACAAATACAGAAAATGAATCTCCTAAAGGCCAGGCCTCCTCAAATGGGTGTGCCGTACC
CAAGAAAGATTCTCTGCCATTGTTGCCCAAAAACAGAGGCATGGTCATAGTGAATGGTGGACTCAAGCAA
GATGAAAGACCTACGGCCAACCCACAGCAAGAGAACATTTCCCAGAATACCCAGCACGAAGATGGCCACA
AATCCCCTTCGTGGATCTCTGAGAACCCATTAGCTGCAAATGAGAATGTCTCCCCAGGAATTCCCTGCGC
AGAAGAACAGTTGTCTAGCATAGCAAAAGGTGTGAATGGCGCCAGCCAGGCTCCCAGCAGTGGAAAATAC
TGCCGGCTATGCGATATTCAGTTCAATAATCTTTCGAACTTTATAACTCACAAGAAGTTTTATTGCTCAT
CACATGCAGCAGAACATGTCAAATGA

Translation (1151 aa):
MSRRKQSKPRQIKRPLEDAIDDEEEECPVEEAEVISKGDFPLEGSFPAGFEPENLSCEDVEFFCNKGDDE
GIQEPAESDGDSHSDKPGQPGVETDDWDGPGELEVFQRDGERKIQSRQQLPVGTTWGPFAGKMDLNNNSL
KTKAQVPMVLTAGPKWLLDVTWQGVEDSKNNCIVYSKGGQLWCTTTKAISEGEELVAFVVDFDSRLQAAS
HMTLTEGMYPARLLDSIQLLPQQAAMASILPTAIVNKDIFPCKSCGIWYRSERNLQAHLMYYCSGRQREA
APVSEENEDNSHQVSSLCPFPQCTKSFSNARALEMHLNSHSGVKMEEFLPPGASLKCTVCSYTADSVINF
HQHLFSHLTQAAFRCNHCHFGFQTQRELLQHQELHVPSGKLPRESDMEHSPSGTEDSLQPATDLLARSDL
SQSQKAMPTKDASSDTELDKCEKKTQLFLTNQRPEIQPAANKQNFSYTKIKSEPSSPRLASSPVQPNIGP
SFPVGPFLSQFAFPQDITMVPQASEILAKMSELVHRRLRHGSSSYPPVIYSPLMPKGATCFECNITFNNL
DNYLVHKKHYCSSRWQQMAKSPEFPSVSEKMPEAVSPNTGQTSINLLNPAAHSSDPENPLLQTSCINSST
VLDLIGPNGKGHEKDFSTQVKKLPTSNSSDDKINGKPVDVKNPSGPLVDGESDPNKTTCEACNITFSRHE
TYMVHKQYYCATRHDPPLKRSASNKVPAMQRTMRTRKRRKMYEMCLPEQEQRPPLVQQRFLDVANLSNPC
SSTQEPTEGLGECYHPRCDIFPGIVSKHLETSLAMNKCVPVPKCDTTHSNVSCLEMDVPIDLSKKCLSQS
ERTTASPKRLLDYHECTVCKISFNKVENYLAHKQNFCPVTAHQRNDLGQLDGKVFPNPESERSSPEVSFE
RNMIKCEKNGNPKQPSPNGNLFSSHLATLQGLKVFSEAAQLIATKEENKHLFLPQCLYPGAIKKTKGADQ
LSPYYGIKPSDYIASSLVIHNTDVEQSTNTENESPKGQASSNGCAVPKKDSLPLLPKNRGMVIVNGGLKQ
DERPTANPQQENISQNTQHEDGHKSPSWISENPLAANENVSPGIPCAEEQLSSIAKGVNGASQAPSSGKY
CRLCDIQFNNLSNFITHKKFYCSSHAAEHVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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