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Report for CCDS20550.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20550.1 Public Mus musculus 6 Tnfrsf1a 23 108 98 CCDS HistoryNCBI Gene:21937Re-query CCDS DB by CCDS ID:20550.1Re-query CCDS DB by GeneID:21937See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20550.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032491.14 ENSMUSP00000032491.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032491.14Link to Ensembl Protein Viewer:ENSMUSP00000032491.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000032491Re-query CCDS DB by Protein ID:ENSMUSP00000032491
Original member Current member NCBI NM_011609.4 NP_035739.2 Accepted alive Link to Nucleotide Sequence:NM_011609.4Link to Protein Sequence:NP_035739.2Re-query CCDS DB by Nucleotide ID:NM_011609Re-query CCDS DB by Protein ID:NP_035739Link to BLAST:NP_035739.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035739.2 454 P25118 454 100% 0 0

Chromosomal Locations for CCDS 20550.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 125350024 125350062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125356825 125356978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125357313 125357441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125357721 125357870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125358054 125358132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125360497 125360573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125360710 125360823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125361092 125361120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125361299 125361584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125361687 125361994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGGGTCTCCCCACCGTGCCTGGCCTGCTGCTGTCACTGGTGCTCCTGGCTCTGCTGATGGGGATACATC
CA
TCAGGGGTCACTGGACTAGTCCCTTCTCTTGGTGACCGGGAGAAGAGGGATAGCTTGTGTCCCCAAGG
A
AAGTATGTCCATTCTAAGAACAATTCCATCTGCTGCACCAAGTGCCACAAAGGAACCTACTTGGTGAGT
GAC
TGTCCGAGCCCAGGGCGGGATACAGTCTGCAGGGAGTGTGAAAAGGGCACCTTTACGGCTTCCCAGA
AT
TACCTCAGGCAGTGTCTCAGTTGCAAGACATGTCGGAAAGAAATGTCCCAGGTGGAGATCTCTCCTTG
C
CAAGCTGACAAGGACACGGTGTGTGGCTGTAAGGAGAACCAGTTCCAACGCTACCTGAGTGAGACACAC
TTC
CAGTGCGTGGACTGCAGCCCCTGCTTCAACGGCACCGTGACAATCCCCTGTAAGGAGACTCAGAACA
CC
GTGTGTAACTGCCATGCAGGGTTCTTTCTGAGAGAAAGTGAGTGCGTCCCTTGCAGCCACTGCAAGAA
A
AATGAGGAGTGTATGAAGTTGTGCCTACCTCCTCCGCTTGCAAATGTCACAAACCCCCAGGACTCAGGT
ACT
GCGGTGCTGTTGCCCCTGGTTATCTTGCTAGGTCTTTGCCTTCTATCCTTTATCTTCATCAGTTTAA
TG
TGCCGATATCCCCGGTGGAGGCCCGAAGTCTACTCCATCATTTGTAGGGATCCCGTGCCTGTCAAAGA
G
GAGAAGGCTGGAAAGCCCCTAACTCCAGCCCCCTCCCCAGCCTTCAGCCCCACCTCCGGCTTCAACCCC
ACT
CTGGGCTTCAGCACCCCAGGCTTTAGTTCTCCTGTCTCCAGTACCCCCATCAGCCCCATCTTCGGTC
CT
AGTAACTGGCACTTCATGCCACCTGTCAGTGAGGTAGTCCCAACCCAGGGAGCTGACCCTCTGCTCTA
C
GAATCACTCTGCTCCGTGCCAGCCCCCACCTCTGTTCAGAAATGGGAAGACTCCGCCCACCCGCAACGT
CCT
GACAATGCAGACCTTGCGATTCTGTATGCTGTGGTGGATGGCGTGCCTCCAGCGCGCTGGAAGGAGT
TC
ATGCGTTTCATGGGGCTGAGCGAGCACGAGATCGAGAGGCTGGAGATGCAGAACGGGCGCTGCCTGCG
C
GAGGCTCAGTACAGCATGCTGGAAGCCTGGCGGCGCCGCACGCCGCGCCACGAGGACACGCTGGAAGTA
GTG
GGCCTCGTGCTTTCCAAGATGAACCTGGCTGGGTGCCTGGAGAATATCCTCGAGGCTCTGAGAAATC
CC
GCCCCCTCGTCCACGACCCGCCTCCCGCGATAA


Translation (454 aa):
MGLPTVPGLLLSLVLLALLMGIHPSGVTGLVPSLGDREKRDSLCPQGKYVHSKNNSICCTKCHKGTYLVS
D
CPSPGRDTVCRECEKGTFTASQNYLRQCLSCKTCRK
EMSQVEISPCQADKDTVCGCKENQFQRYLSETH
F
QCVDCSPCFNGTVTIP
CKETQNTVCNCHAGFFLRESECVPCSHCKKNEECMKLCLPPPLANVTNPQDSG
T
AVLLPLVILLGLCLLSFIFISLMCRYPRWRPEVYSI
ICRDPVPVKEEKAGKPLTPAPSPAFSPTSGFNP
T
LGFSTPGFSSPVSSTPISPIFGPSNWHFMPPVSEVVPTQGADPLLYESLCSVPAPTSVQKWEDSAHPQR
P
D
NADLAILYAVVDGVPPARWKEFMRFMGLSEHEIERLEMQNGRCLREAQYSMLEAWRRRTPRHEDTLEV
V
GLVLSKMNLAGCLENILEALRNPAPSSTTRLPR




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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