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Report for CCDS38182.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38182.1 Public Mus musculus 2 Tspan18 23 108 98 CCDS HistoryNCBI Gene:241556Re-query CCDS DB by CCDS ID:38182.1Re-query CCDS DB by GeneID:241556See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38182.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028646.3 ENSMUSP00000028646.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028646.3Link to Ensembl Protein Viewer:ENSMUSP00000028646.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028646Re-query CCDS DB by Protein ID:ENSMUSP00000028646
Original member Current member EBI ENSMUST00000111265.8 ENSMUSP00000106896.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111265.8Link to Ensembl Protein Viewer:ENSMUSP00000106896.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111265Re-query CCDS DB by Protein ID:ENSMUSP00000106896
Original member Current member NCBI NM_183180.2 NP_899003.1 Accepted alive Link to Nucleotide Sequence:NM_183180.2Link to Protein Sequence:NP_899003.1Re-query CCDS DB by Nucleotide ID:NM_183180Re-query CCDS DB by Protein ID:NP_899003Link to BLAST:NP_899003.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899003.1 248 Q80WR1 248 100% 0 0

Chromosomal Locations for CCDS 38182.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 93204375 93204422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93205700 93205783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93209794 93209976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93210824 93210922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93211818 93211892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93220019 93220213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93222712 93222774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGGAGGGCGACTGTCTGAGCTGCATGAAGTATCTGATGTTTGTTTTCAATTTCTTCGTTTTTCTGGGAG
GC
GCTTGCCTGCTAGGTGTTGGCATCTGGGTCCTGGTGGACCCCACCGGCTTCCGAGAAATCGTGGCTAC
C
AACCCCCTGCTGACCACCGGTGCCTACATCGTACTGGCCATGGGTGGTCTGCTGTTTCTTCTGGGCTTC
CTG
GGCTGCTGCGGGGCTGTCCGAGAGAACAGGTGTCTGCTGCTATTTTTCTTCCTGTTTATCCTGATCA
TC
TTCCTGGTAGAGCTCTCAGCAGCCATCCTGGCCTTCATCTTCAGAGAACACCTCACCCGAGAGTTCTT
C
ACCAAGGAGCTTACCAAGCACTACCAAGGCGATAACGATACGGATGTTTTCTCTGCCACCTGGAATTCA
GTC
ATGATCACATTTGGCTGCTGTGGGGTCAACGGACCTGAAGACTTCAAGCTGGCCTCCGTGTTTCGGC
TG
CTGACGCTGGACACTGAGGAGGTGCCCAAGGCTTGCTGTCGGAGGGAACCCCAGACTCGAGATGGAGT
G
GTGCTGAGCAGGGAGGAGTGCCAGCTGGGACGGAATCCGTTCATAAACAAGCAGGGCTGTTATACAGTG
ATC
CTCAACACCTTCGAAACCTATGTCTACCTGGCCGGAGCCTTTGCCATTGGAGTACTGGCTATTGAGC
TC
TTCCTCATGGTCTTTGCCATGTGCCTCTTCCGGGGCATCCAGTAG


Translation (248 aa):
MEGDCLSCMKYLMFVFNFFVFLGGACLLGVGIWVLVDPTGFREIVATNPLLTTGAYIVLAMGGLLFLLGF
L
GCCGAVRENRCLLLF
FFLFILIIFLVELSAAILAFIFREHLTREFFTKELTKHYQGDNDTDVFSATWNS
V
MIT
FGCCGVNGPEDFKLASVFRLLTLDTEEVPKACCRREPQTRDGVVLSREECQLGRNPFINKQGCYTV
I
LNTFETYVYLAGAFAIGVLAIE
LFLMVFAMCLFRGIQ



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser