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Report for CCDS51621.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51621.1 Public Mus musculus 5 Selplg 23 108 98 CCDS HistoryNCBI Gene:20345Re-query CCDS DB by CCDS ID:51621.1Re-query CCDS DB by GeneID:20345See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51621.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100874.5 ENSMUSP00000098436.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100874.5Link to Ensembl Protein Viewer:ENSMUSP00000098436.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000100874Re-query CCDS DB by Protein ID:ENSMUSP00000098436
Original member Current member NCBI NM_009151.3 NP_033177.3 Accepted alive Link to Nucleotide Sequence:NM_009151.3Link to Protein Sequence:NP_033177.3Re-query CCDS DB by Nucleotide ID:NM_009151Re-query CCDS DB by Protein ID:NP_033177Link to BLAST:NP_033177.3

Chromosomal Locations for CCDS 51621.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 113818990 113820243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGTCCCCAAGCTTCCTTGTGCTGCTGACCATCTTGGGCCCTGGCAACAGCCTTCAGCTGCAGGACCCCT
GGGGGCATGAAACCAAGGAAGCCCCGGGTCCTGTGCATCTCCGGGAACGGAGGCAGGTGGTTGGGGATGA
CGATTTTGAGGACCCTGACTATACGTATAACACAGACCCCCCAGAATTGCTGAAAAATGTCACCAACACC
GTGGCTGCTCACCCTGAGCTGCCAACCACCGTGGTCATGCTAGAGAGAGATTCCACGAGCGCTGGAACCT
CCGAGAGAGCCACTGAGAAGATTGCCACCACTGACCCTACTGCCCCAGGTACAGGAGGGACAGCTGTTGG
GATGCTGAGCACAGACTCTGCCACACAGTGGAGTCTAACCTCAGTAGAGACCGTCCAACCAGCATCCACA
GAGGTAGAGACCTCGCAGCCAGCACCCATGGAGGCAGAGACCTCGCAGCCAGCACCCATGGAGGCAGAGA
CCTCGCAGCCAGCACCCATGGAGGCAGAGACCTCGCAGCCAGCACCCATGGAGGCAGACACCTCGCAGCC
AGCACCCATGGAGGCAGACACCTCAAAGCCAGCACCCACGGAGGCAGAGACCTCAAAGCCAGCACCCACG
GAGGCAGAGACCTCTCAGCCAGCACCCAACGAGGCAGAGACCTCAAAACCAGCACCCACGGAGGCAGAGA
CCTCAAAACCAGCACCCACGGAGGCAGAGACCACCCAGCTTCCCAGGATTCAGGCTGTAAAAACTCTGTT
TACAACGTCTGCAGCCACCGAAGTCCCTTCCACAGAACCTACCACCATGGAGACGGCGTCCACAGAGTCT
AACGAGTCTACCATCTTCCTTGGGCCATCCGTGACTCACTTACCTGACAGCGGCCTGAAGAAAGGGCTGA
TTGTGACCCCTGGGAATTCACCTGCCCCAACCCTGCCAGGGAGTTCAGATCTCATCCCGGTGAAGCAATG
TCTGCTGATTATCCTCATCTTGGCTTCTCTGGCCACCATCTTCCTCGTGTGCACAGTGGTGCTGGCGGTC
CGTCTGTCCCGTAAGACCCACATGTACCCAGTGCGGAACTACTCCCCCACGGAGATGATCTGCATCTCGT
CCCTGCTACCTGAGGGGGGAGACGGGGCCCCTGTCACAGCCAATGGGGGCCTGCCCAAGGTCCAGGACCT
GAAGACAGAGCCCAGTGGGGACCGGGATGGGGACGACCTCACCCTGCACAGCTTCCTCCCTTAG

Translation (417 aa):
MSPSFLVLLTILGPGNSLQLQDPWGHETKEAPGPVHLRERRQVVGDDDFEDPDYTYNTDPPELLKNVTNT
VAAHPELPTTVVMLERDSTSAGTSERATEKIATTDPTAPGTGGTAVGMLSTDSATQWSLTSVETVQPAST
EVETSQPAPMEAETSQPAPMEAETSQPAPMEAETSQPAPMEADTSQPAPMEADTSKPAPTEAETSKPAPT
EAETSQPAPNEAETSKPAPTEAETSKPAPTEAETTQLPRIQAVKTLFTTSAATEVPSTEPTTMETASTES
NESTIFLGPSVTHLPDSGLKKGLIVTPGNSPAPTLPGSSDLIPVKQCLLIILILASLATIFLVCTVVLAV
RLSRKTHMYPVRNYSPTEMICISSLLPEGGDGAPVTANGGLPKVQDLKTEPSGDRDGDDLTLHSFLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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