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Report for CCDS37348.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37348.1 Public Mus musculus 16 Cd96 23 108 98 CCDS HistoryNCBI Gene:84544Re-query CCDS DB by CCDS ID:37348.1Re-query CCDS DB by GeneID:84544See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37348.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023336.9 ENSMUSP00000023336.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023336.9Link to Ensembl Protein Viewer:ENSMUSP00000023336.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000023336Re-query CCDS DB by Protein ID:ENSMUSP00000023336
Original member Current member NCBI NM_032465.2 NP_115854.2 Accepted alive Link to Nucleotide Sequence:NM_032465.2Link to Protein Sequence:NP_115854.2Re-query CCDS DB by Nucleotide ID:NM_032465Re-query CCDS DB by Protein ID:NP_115854Link to BLAST:NP_115854.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115854.2 602 Q3U0X8 602 100% 0 0

Chromosomal Locations for CCDS 37348.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 46035873 46035981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46038443 46038566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46041250 46041336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46041738 46041800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46049679 46049795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46051472 46051543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46052000 46052068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46063917 46064009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46069584 46069769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46071735 46071825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46094740 46094795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46098915 46099122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46109047 46109165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46117686 46118039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46120032 46120092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGGGGAGAAAATGGACATATTGTGTTGTTTACACCATCATCCAGATACAGTTTTTCAGGGGAGTGTGGG
AAGAGCTATTCAATGTTGGAGATGACGTGTATGCTCTACCTGGTTCTGACATCAACTTGACCTGCCAAAC
AAAGGAGAAAAACTTCTTGGTACAGATGCAGTGGTCCAAGGTCACAGATAAGAATGACATGATTGCTCTT
TATCATCCCCAATATGGCCTCTACTGTGGGCAGGAGCATGCCTGTGAGTCACAAGTGGCTGCCACAGAAA
CTGAGAAGGGTGTAACAAATTGGACTCTGTACTTAAGGAATATCTCTTCTGCCCTGGGTGGAAAGTATGA
GTGCATCTTTACTCTGTATCCAGAAGGCATCAAGACTACAGTCTACAACCTCATTGTGGAACCCTATACA
CAAGATGAACACAACTATACAATAGAAATAGAGACAAATCGGACTCTGGAAATACCATGCTTTCAAAATA
CCTCCTCAGAAATTCCACCTAGGTTCACCTTTTCATGGTTGGTGGAGAAAGATGGAGTGGAAGAAGTTCT
CTTCACCCACCATCACCACGTCAACAATTCCACATCATTTAAAGGCAGAATCAGGCTGGGTGGAGACTAT
AGACTCCACCTCTCCCCAGTCCAAATCCAAGACGATGGCAGGACATTCTCTTGCCATCTGACTGTCAATC
CTCTCAAAGCCTGGAAGATGTCCACCACAGTCAAGGTTTTTGCTAAACCAGAAATCCTCATGACTGTGGA
AAACAGCACCATGGATGTCTTAGGAGAGAGAGTATTTACCTGCCTACTGAAGAATGTGTTCCCCAAGGCA
AATATCACCTGGTTTATAGACGGAAGATTTCTTCAAGGCAACGAAGAAGGAATATACATTACAAATGAAG
AGAAGAATTGCAGTAGCGGATTTTGGGAACTGAAGTCAGTTTTAACAAGGATGCACAGTGGACCATCCCA
ATCAAACAACATGACAGCTTGGTGTATGGCTCTGTCTCCAGGCCCCAGAAATAAAATGTGGAATACTTCA
TCACAACCCATCACGGTTTCCTTTGATTCGGTGATAGCCCCAACGAAACATCTACCCACTGTGACAGGTT
CTACCCTGGGTACACAACCTTTTTCAGATGCTGGAGTATCTCCTACAGGGTATCTAGCTACACCTTCAGT
GACAATTGTAGATGAAAATGGGTTGACACCAGATGCAACTCCTCAAACCAGCAATTCCAGCATGACTACT
AAAGATGGCAACTATTTGGAAGCCTCCAGTGGGACAGATGCCAAGAACTCCTCAAGAGCTGCTGCTTCTT
CTAAAAGTGGATCTTGGCCTTTTCCTTTCACTTCTCCTCCAGAATGGCACTCACTGCCTGGTACCTCCAC
TGGACCCCAAGAACCAGACTCCCCAGTTTCATGGATACCCAGTGAAGTACACACTTCAGCCCCTTTGGAC
GCCAGCTTAGCTCCTCATGATACCATCATCAGTACAACCACAGAATTTCCAAATGTCCTCACAACTGCAA
ATGGAACTACTAAAATTGACCATGGACCTATCACCAGTATCATAGTTAATCAACCCAGTGATGGAATGTC
CTGGCCTGTGCTTGTCGCGGCTTTGCTCTTTTTCTGCACACTATTGTTTGGGCTTGGAGTAAGAAAATGG
TATCGGTATCAAAATGAAATCATGGAGAGACCCCCACCTTTCAAGCCACCACCACCTCCCATCAAGTACA
CGTATATTCAAGAACCCATTGGATGCGACCTGTGTTGTCATGAGATGGAGGTCCTCTAA

Translation (602 aa):
MGRKWTYCVVYTIIQIQFFRGVWEELFNVGDDVYALPGSDINLTCQTKEKNFLVQMQWSKVTDKNDMIAL
YHPQYGLYCGQEHACESQVAATETEKGVTNWTLYLRNISSALGGKYECIFTLYPEGIKTTVYNLIVEPYT
QDEHNYTIEIETNRTLEIPCFQNTSSEIPPRFTFSWLVEKDGVEEVLFTHHHHVNNSTSFKGRIRLGGDY
RLHLSPVQIQDDGRTFSCHLTVNPLKAWKMSTTVKVFAKPEILMTVENSTMDVLGERVFTCLLKNVFPKA
NITWFIDGRFLQGNEEGIYITNEEKNCSSGFWELKSVLTRMHSGPSQSNNMTAWCMALSPGPRNKMWNTS
SQPITVSFDSVIAPTKHLPTVTGSTLGTQPFSDAGVSPTGYLATPSVTIVDENGLTPDATPQTSNSSMTT
KDGNYLEASSGTDAKNSSRAAASSKSGSWPFPFTSPPEWHSLPGTSTGPQEPDSPVSWIPSEVHTSAPLD
ASLAPHDTIISTTTEFPNVLTTANGTTKIDHGPITSIIVNQPSDGMSWPVLVAALLFFCTLLFGLGVRKW
YRYQNEIMERPPPFKPPPPPIKYTYIQEPIGCDLCCHEMEVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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