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Report for CCDS25574.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25574.1 Public Mus musculus 11 Apoh 23 108 98 CCDS HistoryNCBI Gene:11818Re-query CCDS DB by CCDS ID:25574.1Re-query CCDS DB by GeneID:11818See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25574.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000049.5 ENSMUSP00000000049.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000049.5Link to Ensembl Protein Viewer:ENSMUSP00000000049.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000000049Re-query CCDS DB by Protein ID:ENSMUSP00000000049
Original member Current member NCBI NM_013475.4 NP_038503.4 Accepted alive Link to Nucleotide Sequence:NM_013475.4Link to Protein Sequence:NP_038503.4Re-query CCDS DB by Nucleotide ID:NM_013475Re-query CCDS DB by Protein ID:NP_038503Link to BLAST:NP_038503.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038503.4 345 Q01339 345 100% 0 0

Chromosomal Locations for CCDS 25574.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 108395344 108395407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108395816 108395992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108397299 108397395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108404811 108404887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108407291 108407479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108409131 108409310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108411995 108412192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108414240 108414295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGGTTTCCCCGGTGCTCGCCTTGTTCTCCGCCTTCCTCTGCCATGTTGCTATTGCAGGACGGATCTGTC
CGAAGCCGGATGACCTACCATTTGCTACGGTTGTCCCCTTAAAGACATCCTACGACCCTGGGGAGCAGAT
TGTCTACTCCTGCAAGCCAGGCTACGTGTCCAGGGGAGGGATGAGACGGTTTACCTGTCCTCTCACAGGA
ATGTGGCCCATCAACACCCTGAGATGTGTCCCCAGAGTATGTCCTTTCGCTGGAATCTTAGAAAATGGAA
TTGTACGCTACACGAGTTTTGAATATCCCAAGAACATCAGTTTTGCTTGTAACCCTGGGTTTTTTCTGAA
TGGGACCAGCTCATCTAAGTGCACGGAGGAAGGAAAATGGAGCCCAGATATTCCTGCTTGTGCTCGCATC
ACCTGCCCGCCACCACCAGTTCCAAAGTTTGCACTCCTTAAGGATTATAGGCCTTCAGCTGGGAACAACT
CTTTGTATCAGGACACAGTGGTCTTTAAATGCTTGCCACACTTTGCCATGATCGGAAATGACACAGTCAT
GTGCACAGAACAAGGAAACTGGACCCGATTGCCAGAATGCCTGGAAGTAAAATGTCCCTTCCCTCCGAGG
CCAGAAAATGGGTATGTGAATTATCCTGCAAAGCCGGTGCTTCTATATAAGGATAAAGCCACATTTGGTT
GCCATGAGACATACAAGCTGGACGGCCCAGAAGAAGCGGAATGTACCAAGACGGGAACTTGGTCCTTCTT
GCCGACCTGTAGAGAGTCTTGCAAACTCCCCGTTAAGAAAGCCACCGTGCTGTACCAAGGGATGAGGGTG
AAGATCCAGGAACAGTTTAAGAATGGGATGATGCATGGCGACAAAATTCACTTCTACTGCAAAAACAAAG
AGAAGAAGTGCAGCTACACTGTGGAGGCTCATTGCAGAGATGGCACTATCGAGATTCCCTCGTGCTTCAA
GGAGCACAGTTCTCTGGCTTTCTGGAAAACGGATGCATCAGAACTGACACCGTGCTGA

Translation (345 aa):
MVSPVLALFSAFLCHVAIAGRICPKPDDLPFATVVPLKTSYDPGEQIVYSCKPGYVSRGGMRRFTCPLTG
MWPINTLRCVPRVCPFAGILENGIVRYTSFEYPKNISFACNPGFFLNGTSSSKCTEEGKWSPDIPACARI
TCPPPPVPKFALLKDYRPSAGNNSLYQDTVVFKCLPHFAMIGNDTVMCTEQGNWTRLPECLEVKCPFPPR
PENGYVNYPAKPVLLYKDKATFGCHETYKLDGPEEAECTKTGTWSFLPTCRESCKLPVKKATVLYQGMRV
KIQEQFKNGMMHGDKIHFYCKNKEKKCSYTVEAHCRDGTIEIPSCFKEHSSLAFWKTDASELTPC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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