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Report for CCDS48392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48392.1 Public Mus musculus 1 Prg4 23 108 98 CCDS HistoryNCBI Gene:96875Re-query CCDS DB by CCDS ID:48392.1Re-query CCDS DB by GeneID:96875See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48392.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161611.7 ENSMUSP00000125677.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161611.7Link to Ensembl Protein Viewer:ENSMUSP00000125677.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161611Re-query CCDS DB by Protein ID:ENSMUSP00000125677
Original member Current member EBI ENSMUST00000164600.7 ENSMUSP00000128943.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164600.7Link to Ensembl Protein Viewer:ENSMUSP00000128943.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164600Re-query CCDS DB by Protein ID:ENSMUSP00000128943
Original member Current member NCBI NM_021400.3 NP_067375.3 Accepted alive Link to Nucleotide Sequence:NM_021400.3Link to Protein Sequence:NP_067375.3Re-query CCDS DB by Nucleotide ID:NM_021400Re-query CCDS DB by Protein ID:NP_067375Link to BLAST:NP_067375.3

Chromosomal Locations for CCDS 48392.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 150449984 150450081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150450763 150450888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150451249 150451449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150451854 150452010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150452223 150452359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150453463 150453540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150454052 150456337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150457488 150457607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150458149 150458292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150460652 150460771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150462097 150462219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150465498 150465573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3666 nt):
ATGGGGTGGAAAATACTTCCCGTCTGCTTGTCGCTGCTGCTTCCTGTTGTCTTGATTCAACAGGTTTCAT
CT
CAAGATTTATCAAGCTGTGCAGGGAGATGTGGGGAAGGGTACTCTAGAGATGCCACCTGCAACTGTGA
T
TATAACTGTCAACACTACATGGAGTGCTGTCCTGATTTCAAGAGAGTCTGCACTACAGAGCTCTCCTGC
AAA
GGACGCTGCTTCGAGTCCTTCGCTCGAGGGAGGGAGTGTGACTGTGACTCCCAGTGTAAACAGTATG
GC
AAGTGCTGTGCAGATTATGACAGCTTCTGTGAAGAAGTGCATAATCCCACATCACCATCTCCAAAGAC
T
GCACCTCCGCCTCCAGGAGCATCTCACACCATCAAATCAACTACCAAACGCTCACCCAAATCACCAAAA
AAG
AAGACTAAGAAAGTTGTAGAATCTGAGGAAATAACAGAAGAACATTCTGTTTCTGAAAATCAAGAGT
CC
TCCTCCTCCTCCTCTTCTTCCTCTTCAACTATTCGGAAAATCAAGTCTTCCAAAAATTCAGCTAATAG
A
GAATTACAGAAGAACCCAAAAGTAAAAGATAACAAGAAAAACACTCCTAAAAAGAAACCCAATCCAGAA
CCG
CCGGCTGTGGATGAAGCTGGAAGCGGGCTGGATAATGGTGAGTTCAAGCTCACCCCACCTCCTCCTG
AC
CCTCCTACTACTCCACACAGCAAAGTCACCACATCTCCCAAGACTACAGCAGCAAAACCAGTAACTCC
T
AAACCCAGTCTTGCACCTAATTCTGAGACATCCAAAGAGGCATCTTTAGCATCCAATAAAGAGACAACA
GTT
GAAACGAAAGAGACTACTGCAACAAATAAACAATCTTCTGCCAGTAAAAAAAAGACGACTTCAGCTA
AA
GAGACACGGAGTGCAGAGAAAACATCTGATAAAGATGTTGAGCCCACATCTACAACTCCCAAGAACTC
A
GCTCCCACTACTACCAAGAAGCCTGTTACTACAACCAAGGAACCAGTTCCTACCACTCCCAAGGAGCCT
GAA
CCCACAACTCCCAAGGAACCACCTCCAACCACCAAGAAGCCTGAACCCACCACCCCCAAGGAGCCTG
AA
CCCACAACTCCCAAGGAGCCTGAACCCACCACCCCCAAGGAGCCTGAACCCACCACTCCCAAGGAGCC
T
GAACCCACAACTCCCAAGGAACCACCTCCAACCACCAAGAAGCCTGAACCCACCACCCCCAAGGAGCCT
GAA
CCCACAACTCCCAAGGAGCCTGAACCCACCACCACCAAGGAGCCTGAACCCACCACCACCAAGGAGC
CT
GAATCCACCACCCGCAAGGAGCCTGAACCCACCACTCCCAAGGAGCCTGAACCCACAACTCCCAAGGA
G
CCTGAACCTACAACCCCCAAGGAGCCTGAACCCACAACTCCCAAGGAGCCTGAACCCACCACTCTCAAG
GAG
CCTGAACCCACCACGCCCAAGGAGCCTGAACCCACAACTCCCAAGGAGCCTGAACCTACAACCCCCA
AG
GAGCCTGAACCCACAACTCCCAAGGAGCCTGAACCCACAACTCCCAAGGAGCCTGAACCCACAACTCC
C
AAGGAGCCTGAACCCACAACTCCCAAGGAGCCTGAACCCACCACGCCCAAGGAGCCTGAACCCACAACC
CCC
AAGGAGCCTGAACCTACAACCCCCAAGGAGCCTGAACCCACAACTCCCAAGGAGCCTGAACCCACCA
CT
CTCAAGGAGCCTGAACCTACAACCCCCAAGGAGCCTGAACCCACCACTCCCAAGGAGCCTGAACCCAC
C
ACTCTCAAGGAGCCTGAACCCACCACGCCCAAGGAGCCTGAACCCACCACTCTCAAGGAGCCTGAACCT
ACA
ACCCCCAAGGAGCCTGAACCCACCACCACCAAGGAGCCTGAATCCACCACCCGCAAGGAGCCTGAAC
CC
ACCACTCCCAAGGAGCCTGAACCCACAACTCCCAAGGAGCCTGAACCCACAACTCCCAAGGAGCCTGA
A
CCCACCACGCCCAAGGAGCCTGAACCCACAACTCCCAAGGAGCCTGAACCCACCACGCCCAAGGAGCCT
GAA
CCCACAACCCCCAAGGAGCCTGAACCCACAACTCCCAAGAAACCTGAACCCACAACTCCCAAGGAGC
CT
GAACCTACAACCCCCAAGGAGCCTGAACCCACCACCCCCAAGGAGCCTGAACCCACCACGCCCAAGGA
G
CCTGAACCCACAACTCGCAAGGAGCCTGAACCTACAACTCCCAAGGAGCCTGAACCTACAACCCCCAAG
GAG
CCTGAACCCACAACTCCCAAGAAGCCTGAACCCACCACCACATCACCCAAAACCACTACTCTGAAAG
CA
ACAACTCTTGCACCCAAAGTAACTGCTCCAGCAGAAGAGATTCAGAACAAACCTGAAGAAACAACTCC
T
GCATCAGAAGATTCTGATGATTCTAAAACAACTCTAAAACCACAGAAGCCAACCAAAGCACCCAAGCCT
ACC
AAAAAGCCAACCAAAGCACCCAAGAAGCCCACCTCTACCAAAAAGCCAAAGACACCAAAAACAAGAA
AA
CCAAAAACTACACCATCTCCTCTAAAGACGACTTCAGCAACACCTGAACTGAATACCACCCCTCTAGA
A
GTCATGCTGCCAACCACCACCATCCCTAAACAAACTCCAAACCCTGAAACAGCTGAAGTAAATCCAGAT
CAT
GAAGATGCAGATGGAGGTGAAGGAGAAAAACCTCTGATTCCCGGGCCCCCTGTGCTATTCCCCACAG
CT
ATTCCAGGCACTGATCTTTTGGCCGGGAGACTCAATCAAGGCATTAACATCAATCCCATGCTTTCAGA
T
GAGACCAATTTATGCAATGGTAAGCCAGTGGATGGACTGACTACGCTGCGCAATGGGACATTAGTTGCA
TTT
CGAGGTCATTATTTCTGGATGCTGAATCCATTCAGACCACCATCTCCACCACGCAGAATTACCGAAG
TT
TGGGGTATTCCCTCTCCTATTGACACAGTTTTTACTAGATGTAACTGTGAAGGAAAAACTTTCTTCTT
T
AAGGATTCTCAGTACTGGCGCTTCACCAATGATGTGGTAGATCCTGGGTATCCTAAACAAATTGTCAAA
GGC
TTTGGAGGACTAACAGGGAAGATAGTGGCTGCTCTTTCAATAGCCAAGTACAAGGACAGGCCTGAAT
CT
GTGTACTTCTTCAAGAGAGGTGGCAACATTCAGCAGTACACTTATAAACAGGAGCCAATGAAGAAGTG
C
ACAGGGAGGCGGCCTGCCATCAACTACTCGGTGTACGGGGAGGCAGCACAGGTCAGGAGGCGCCGCTTT
GAG
CGTGCTGTTGGACCTTTCCAGACACACACCTTCAGGATCCATTACTCGGTGCCCATGAGAGTTTCTT
AT
CAAGACAAAGGTTTCCTCCACAATGAAGTCAAAGTGAGTACAATGTGGAGAGGGTTTCCAAATGTTGT
T
ACTTCAGCGATAACACTGCCTAACATTAGGAAACCTGATGGCTATGATTACTACGCCTTTTCCAAAGAT
CAA
TACTATAACATTGATGTGCCTACAAGAACAGCAAGAGCAATTACCACACGTTCAGGGCAGACCCTCT
CC
AAAATCTGGTACAACTGTCCTTGA


Translation (1221 aa):
MGWKILPVCLSLLLPVVLIQQVSSQDLSSCAGRCGEGYSRDATCNCDYNCQHYMECCPDFKRVCTTELSC
K
GRCFESFARGRECDCDSQCKQYGKCCADYDSFCEE
VHNPTSPSPKTAPPPPGASHTIKSTTKRSPKSPK
K
KTKKVVESEEITE
EHSVSENQESSSSSSSSSSTIRKIKSSKNSANRELQKNPKVKDNKKNTPKKKPNPE
P
PAVDEAGSGLDNGEFKLTPPPPDPPTTPHSKVTTSPKTTAAKPVTPKPSLAPNSETSKEASLASNKETT
V
ETKETTATNKQSSASKKKTTSAKETRSAEKTSDKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTPKEP
E
PTTPKEPPPTTKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPPPTTKKPEPTTPKEP
E
PTTPKEPEPTTTKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLK
E
PEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT
P
KEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEP
T
TPKEPEPTTTKEPESTTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEP
E
PTTPKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPK
E
PEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPASEDSDDSKTTLKPQKPTKAPKP
T
KKPTKAPKKPTSTKKPKTPKTRKPKTTPSPLKTTSATPELNTTPLEVMLPTTTIPKQTPNPETAEVNPD
H
EDADGGEGEKPLIPGPPVLFPTAIPGTDLLAGRLNQGININPMLS
DETNLCNGKPVDGLTTLRNGTLVA
F
R
GHYFWMLNPFRPPSPPRRITEVWGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDVVDPGYPKQIVK
G
FGGLTGKIVAALSIAKYKDRPESVYFFKR
GGNIQQYTYKQEPMKKCTGRRPAINYSVYGEAAQVRRRRF
E
RAVGPFQTHTFRIHYSVPMRVSYQDK
GFLHNEVKVSTMWRGFPNVVTSAITLPNIRKPDGYDYYAFSKD
Q
YYNIDVPTRTARAITTRSGQTLSKIWYNCP




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser