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Report for CCDS8533.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8533.1 Public Homo sapiens 12 GALNT8 24 110 108 CCDS HistoryNCBI Gene:26290Re-query CCDS DB by CCDS ID:8533.1Re-query CCDS DB by GeneID:26290See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8533.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252318.7 ENSP00000252318.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000252318.7Link to Ensembl Protein Viewer:ENSP00000252318.2Re-query CCDS DB by Nucleotide ID:ENST00000252318Re-query CCDS DB by Protein ID:ENSP00000252318
Original member Current member NCBI NM_017417.2 NP_059113.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017417.2Link to Protein Sequence:NP_059113.1Re-query CCDS DB by Nucleotide ID:NM_017417Re-query CCDS DB by Protein ID:NP_059113Link to BLAST:NP_059113.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059113.1 637 Q9NY28 637 100% 0 0

Chromosomal Locations for CCDS 8533.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 4720678 4720888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4726532 4726829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4739163 4739329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4744517 4744700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4745429 4745626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4746144 4746258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4760958 4761143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4763253 4763390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4763952 4764047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4765379 4765546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4772445 4772597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1914 nt):
ATGATGTTTTGGAGGAAACTCCCCAAAGCCCTCTTCATTGGGCTGACTCTGGCCATTGCTGTCAATCTCC
TT
CTGGTATTTTCTAGCAAGGGGACTTTACAAAACCTGTTTACGGGTGGTCTCCACAGGGAGCTTCCTTT
A
CATCTGAATAAACGCTACGGGGCAGTGATAAAGAGACTCTCCCACTTGGAGGTGGAATTGCAGGATCTG
A
AA
GAAAGTATGAAATTAGCTCTGAGGCAACAAGAAAATGTGAACAGCACACTGAAGAGGGCGAAAGATG
AA
GTACGCCCTCTTCTAAAGGCAATGGAAACCAAGGTGAATGAGACAAAGAAGCACAAAACCCAAATGAA
A
CTCTTCCCACACTCACAGCTTTTCAGGCAATGGGGCGAGGATCTTTCTGAGGCCCAGCAGAAGGCGGCC
CAG
GACCTCTTCCGGAAGTTTGGTTACAACGCGTACCTCAGCAACCAGCTGCCTCTCAATCGCACCATCC
CC
GACACGCGAGACTACAGATGTCTTCGGAAGACATATCCTTCCCAACTCCCATCCCTCAGTGTCATTCT
C
ATATTCGTGAATGAAGCTCTGTCCATTATACAACGGGCCATCACCAGTATCATCAACCGGACGCCCTCT
CGA
TTGTTGAAGGAAATCATCTTGGTGGATGATTTCAGCTCAAATGGAGAACTAAAGGTACACTTGGATG
AG
AAGATTAAGCTTTACAACCAGAAGTATCCAGGACTACTGAAAATAATACGGCATCCTGAAAGGAAAGG
T
CTTGCTCAAGCCCGCAACACTGGCTGGGAAGCTGCCACAGCAGACGTGGTCGCCATCTTGGATGCTCAC
ATT
GAAGTCAATGTTGGGTGGGCAGAGCCAATCTTGGCTCGGATTCAGGAGGACCGCACTGTGATTGTGT
CT
CCTGTGTTTGACAACATTCGTTTTGACACCTTCAAACTGGATAAGTATGAACTGGCAGTTGATGGGTT
T
AACTGGGAACTCTGGTGCCGCTACGATGCACTGCCACAAGCCTGGATTGATCTGCATGATGTCACTGCC
CCA
GTGAAGAGTCCTTCAATCATGGGCATCCTGGCTGCTAACAGGCACTTCCTGGGAGAGATCGGGTCTC
TG
GATGGTGGAATGCTCATCTATGGAGGAGAGAACGTGGAGCTTAGCCTGAGGGTGTGGCAGTGTGGAGG
G
AAGGTCGAGATTTTGCCCTGTTCCCGGATTGCCCACCTAGAGAGACACCACAAGCCCTACGCCTTGGAT
CTC
ACCGCTGCCTTGAAGCGCAATGCTCTGCGAGTGGCCGAAATCTGGATGGATGAGCACAAACACATGG
TC
TACTTGGCCTGGAACATACCTCTCCAGAACTCTGGAATAGATTTTGGAGACGTTTCTTCCAGAATGGC
A
CTCCGGGAAAAACTGAAATGTAAAACTTTTGACTGGTACCTGAAAAATGTTTATCCACTCTTGAAGCCA
CTC
CACACCATCGTGGGCTATGGAAGAATGAAAAACCTATTGGATGAAAATGTCTGCTTGGATCAGGGAC
CC
GTTCCAGGCAACACCCCCATCATGTATTACTGCCATGAATTCAGCTCACAGAATGTCTACTATCACCT
A
ACTGGGGAGCTCTATGTGGGACAACTGATTGCAGAGGCCAGTGCTAGTGATCGCTGCCTGACAGACCCT
GGC
AAGGCGGAGAAGCCCACCTTAGAACCATGCTCCAAGGCAGCTAAGAATAGACTGCATATATATTGGG
AT
TTTAAACCGGGAGGAGCTGTCATAAACAGAGATACCAAGCGGTGTCTGGAGATGAAGAAGGATCTTTT
G
GGTAGCCACGTGCTTGTGCTCCAGACCTGTAGCACGCAAGTGTGGGAAATCCAGCACACTGTCAGAGAC
TGG
GGTCAGACCAACAGCCAGTGA


Translation (637 aa):
MMFWRKLPKALFIGLTLAIAVNLLLVFSSKGTLQNLFTGGLHRELPLHLNKRYGAVIKRLSHLEVELQDL
K
ESMKLALRQQENVNSTLKRAKDEVRPLLKAMETKVNETKKHKTQMKLFPHSQLFRQWGEDLSEAQQKAA
Q
DLFRKFGYNAYLSNQLPLNRTIPDTRDY
RCLRKTYPSQLPSLSVILIFVNEALSIIQRAITSIINRTPS
R
LLKEIILVDDFSSN
GELKVHLDEKIKLYNQKYPGLLKIIRHPERKGLAQARNTGWEAATADVVAILDAH
I
EVNVG
WAEPILARIQEDRTVIVSPVFDNIRFDTFKLDKYELAVDGFNWELWCRYDALPQAWIDLHDVTA
P
V
KSPSIMGILAANRHFLGEIGSLDGGMLIYGGENVELSLRVWQCGGKVEILPCSRIAHLERHHKPYALD
L
TAALKRNALRVAEIWMDEHKHMVYLAWNIPLQ
NSGIDFGDVSSRMALREKLKCKTFDWYLKNVYPLLKP
L
HTIVGYGR
MKNLLDENVCLDQGPVPGNTPIMYYCHEFSSQNVYYHLTGELYVGQLIAEASASDRCLTDP
G
KAEKPTLEPCSKAAKNRLHIYWDFKP
GGAVINRDTKRCLEMKKDLLGSHVLVLQTCSTQVWEIQHTVRD
W
GQTNSQ




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser