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Report for CCDS20717.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20717.1 Public Mus musculus 6 Resf1 23 108 98 CCDS HistoryNCBI Gene:67246Re-query CCDS DB by CCDS ID:20717.1Re-query CCDS DB by GeneID:67246See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20717.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046689.12 ENSMUSP00000041180.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046689.12Link to Ensembl Protein Viewer:ENSMUSP00000041180.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000046689Re-query CCDS DB by Protein ID:ENSMUSP00000041180
Original member Current member EBI ENSMUST00000100765.10 ENSMUSP00000098328.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100765.10Link to Ensembl Protein Viewer:ENSMUSP00000098328.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000100765Re-query CCDS DB by Protein ID:ENSMUSP00000098328
Original member Current member EBI ENSMUST00000189932.6 ENSMUSP00000140026.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189932.6Link to Ensembl Protein Viewer:ENSMUSP00000140026.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189932Re-query CCDS DB by Protein ID:ENSMUSP00000140026
Original member Current member NCBI NM_001289661.1 NP_001276590.1 Accepted alive Link to Nucleotide Sequence:NM_001289661.1Link to Protein Sequence:NP_001276590.1Re-query CCDS DB by Nucleotide ID:NM_001289661Re-query CCDS DB by Protein ID:NP_001276590Link to BLAST:NP_001276590.1
Original member Current member NCBI NM_001289662.1 NP_001276591.1 Accepted alive Link to Nucleotide Sequence:NM_001289662.1Link to Protein Sequence:NP_001276591.1Re-query CCDS DB by Nucleotide ID:NM_001289662Re-query CCDS DB by Protein ID:NP_001276591Link to BLAST:NP_001276591.1
Original member Current member NCBI NM_026054.3 NP_080330.1 Accepted alive Link to Nucleotide Sequence:NM_026054.3Link to Protein Sequence:NP_080330.1Re-query CCDS DB by Nucleotide ID:NM_026054Re-query CCDS DB by Protein ID:NP_080330Link to BLAST:NP_080330.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276590.1 1521 Q5DTW7-1 1521 100% 0 0
NP_001276591.1 1521 Q5DTW7-1 1521 100% 0 0
NP_080330.1 1521 Q5DTW7-1 1521 100% 0 0

Chromosomal Locations for CCDS 20717.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 149325458 149329784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149331426 149331506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149334592 149334749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4566 nt):
ATGAATTGGAATACAAAACAAGAGAATGTTCCCAAACCCCCACCATATTCTAAAACCCAGTCATCTATCT
TGCAGCATTTTTTAATGACTTCTACAACATCTCAAAGTTCTTTCAACTATTCTCCCCATAACCAAGAAGC
ATCTCAAACTTCTTTCAACTATTCTCTCCATAACCAAGAAGCATGCATGTATTCTGGGAATTCAAATTCA
GTTTCACAGCCACTTCTGAGCGGCAGAAATTATATAACTCCTCAGACTCAGATCTCTGTTTCTAATATGC
CTACCAGAACAATTGTGGCCTCACAGTCTTCAATGGAAAGAGTTGTATCTACAAATGGTAAAGGACCACA
ACAACCAAACCACAATTTGCAAACAGTGTCTTCAGGAATTATGCAGAATGTCTGGTTGCCTTCCCATACA
GAAGCAACCATATCTCATAATCCCGACGGAGGGACTAATATGCCTTACATGCATCCACCACAGAATCAGC
TTGTCACATCAGATACCTATTCTATGCAACTACAAATGGCTCCTTTACATTCTGGAAAAGTACCTATGAC
ACATCAAGGAAGTCAGGGACTTAATCACTTCATACCAGATCAGTTGGTTGACTGGACACAGTATACATCC
AACGAACTTTCTTATCCTGAATACAGGCCACCTCCAAAGCAATACTCCTACATACTGCCAGCTACTACAT
CATTACAAGTTAAAAATAATCAGCTCCCAACTTATACACAGAGCTTACAGTCAAAGCATTCTGTACCTTT
GTCATCACATCAGTATGCTGCAGAAGCCAGCAAAAGACTCTCTGCCCTTCCTTACAGCTGTAGATATGAA
AACCAACATGTGCAGAATGCTCAGCCTGTTTCTAAACACTTGCCTATGGAAGTTCCTCAGAGTTCAGAAG
TGCACTCATCTGAAAAAAAGAAAGATACTTACAGAGGCTTTAAGCAGCAGTGGCAGAACCCTAATGAGAA
AGTCAGCATTGGACAATTCTCTGAGGTGAAAATAAATATCAAGCAGCCTTACAGTGAATCTGTTAGACCT
TCTGGGGATGGTGTTCAGGCACTTGTTCAAAATAATCAAGAAAAAAGAAAATATACCTACAATCCTAATA
CAAATCAAGTAATAGATACAAATGCCACAAAAGAAAAGCTGGTGAGGGATATTAAATCTCTAGTAGAAAT
CAAAAAGAAGTTTTCAGAACTTGCAAGAAAAATTAAAATTAATAAAAGTCTTTTGATGGCAGCTGGTTGT
AGTAAAACAGCTAATACTTCTTATACTGAACCAATTCAGCATTCTGAATTTTCAGCAAAAGAAATGTCTG
CTAAAAATGGCAATGACTGTTCCATGGAATTGCTAGCAACATGTCTTTCTCTTTGGAAAAACCAACCTTC
AAAAACCACAGAAGAAAATGTTCCAAAACCTTTAGAAGAAAAACAGTGTAACACATCAAGAATCAGTACA
ACCGTAGTGGGCAGTGCCAATCCCACAAATGAAGTTCATGTTAAGAGTTTGTGTTCTGGTGTTGGAAATT
CTCAGAAAATGATGAGCTCATCACAAACAGTATTGCCAGTTCTCATACCGAGCTGTGAGTCTTCCGGTGT
AGCTGTAGGAAAAGGAACAGAGCTTCAGATTGCTGTGGTGTCGCCTTTAGTTCTTTCAGATACTAATACC
TTACCTGGAAAAGACTCAGTGCCTGAAGTTTTACCTGAAACACTGTATCCAGTTGTTAAGGAAGGTAGTG
TTTGTAGCTTACAAACCCAACCAACAGAAACTGTTGCTTTACCTTTTGATGTTATAGGAGCTGTAGCAAG
TAATAACATATCAGCAGAGATTCCTCTGCCTGTTGATAAGGAAAAGCAGCACAAACCAATACAGGGTGAT
CCAGACATAGCTGATAGCAGCTTAGGAAAACACTCTCCCCTGGGCACTGAAGTTCTGCCTAAGCCTATGG
ATAGCACCATTGTGAGTGGACCTATGTTACAAATCGAAAGTATCTGTTCTCTTGCAGAAGGGGATGTATC
TTACAATTCCCAGATAGCTGAGATATTCAACTCTGTACAAACTGAGCCCCAGAAACCTTCACCTAATCAG
GTAATTGATAGTCAACAAGAACAAGTATATGATACCACTGAAAATAAAGACTTTAGCTTACAGAAAGATA
AGTGTGTACAGTGTACAGATGTTCCTCATGAGGTCCCTGAGCAGCCAGAGCCTCTGCAGCCTGAAGAGCC
AGCATCTAGTGAGTATGTGGAAGCAAACAGAGAAGCCACAGAGGAAAGCTGTAGGGAGTACACTGGTAGA
AAAGAAAGTACAGCTAAGGATGTATGTTTACCAGCTGCTATTCAGCAGGATCCTCACCCTCGGGAAACTG
ATATGTTCAGTAAATCAGACCACAGTCTTCCTGCAATAAATGAGATTAATGATGAAAGTGAACCTATCTC
ATACCTACATGACCAGCTGTCAGAGCTTTTAAAAGAGTTCCCTTATGGCATTGAAACTTTTAACAGACAT
GAAGTGTCTTTGGACCAACAAAAGACACATAAAATCGTAGAAAATCAAACTGGTGGTAAAACTAGTAATG
TGTCTGGGGATAGCACAGACCAAATAAAAATTACAGTATTAAACTCTGAACAAATCAAAGAACTATTTCC
TGAAGATGATCAGCCCTGTGACAAGTTGGCGGAACCTGAGAATAAAGAAATTGTTGCGGAAGTAAAGAGC
CCATGTGACTCACAGATTCCTAGAGAAGAAAGTCATGACCTTGGAATGTTGGATCCAGAGAAAGACAAAA
TCCATTGCTGTGCCTTGGGTTGGCTCTCAATGGTGTATGAAGGTGTGCCACAGTGTCATTGCAGTTCTAC
AGAAAAGAAGGAGAAAGACCAGTGTTTGGACATCAACAGCAGCAAACAAGGAGAGCAGCCCTGCAATAGT
GGAATCACTATTTTTGAAATTAATCCTGTTTCTAATAACTCAAAAACTCCTCTGACCCAAGCAACTGAGG
AAGGCCATTTTTCTGCAGTGCATGGTGAAAAGACCAAAGCATCTAAAACAAAAGACAACAGGGAGGGACA
GGAATTAGCCTGTCATTTTTCAGCTAAATGTTACAAAAAAGATAAAAAAGGTAATTTTAAAATAAGGCAT
GATACCTCACTGAAAATGGAGCAAAAACTAAAAAATATTTCATCTAAATGTGACATACCAAACCCCTCAA
AATGCAATAAGATAGCAGCCCCTGAAATACTTCACGTAACAACTTCTAACTCTGCTAAAAATATGCCATT
TTCTAAACAAGCCTCTCAGGAAAGCCTACAGAAGAAACACACGTCCCAAGACTTGGGTCCAGTAAAAGCA
CCTATAGAACTTTCGTCAAACACAGATCCGTGCAGGAGTAATACCTCTTCAGTACAGTCAGTATCACCAG
AAAAGAAAAAACTAAAATTCAAAGCAGGTGGCTCCAGGTTGAAATATTTTGAAAAAAGAAAGACGGATCA
CGTTATTATTCCAGATGTAGAAATAAAAAAGAAGAAATATGAAAAGCAAGAACAGAACAAAAATGCTGGA
GACACACTCAAATTGTGCAGTATTCTTACAGAGTCAAATGAAAGAGCCAGTGTTCAAGAAAAGACAGTTC
CAAGTCCTGAGTCCTCAGACCCAAAGGGTAGCTCCTCTAAGAGTACTAGAGTTATAACAGTGCAGGAATA
TTTACAACGGCAGAAAGACAAACAAATAACTGGGAATAATGCTTCCAGAAACATCTGTGTAGAAACTGTG
CTATGTGACTCGGGGCACACGAAGACCAGTAAGCATTCTGCAGCAGTAAGCTGGGGAAAGTTAGTTGAGG
GGCAGAGTATCAGTGCAGAGACTGCAAAAGAACTGGAACATAATTCTAGCAGCCATGGTAAAGACTTCAA
GATCCATCACTCTGAGGCGTCTAGAACACACAGTGTGTCAAATAATAATAAAGGAAAGTTTGATGGGAAG
CAGCCTGATAAAATGTTTAAAAATAAGACCAGTATGAATAATGAGTCCAACCAGATGCCTCTCCAGGTAA
AAGAACAAAGGAAACAGTACTTGAATCGAGTTGCGTTTAAATGCACAGAACGGGAAAGCATATGTCTCAC
CAAATTGGATAGTGCATCCAAGAAGCTTAGTATAGAGAAAAAGAGTGGGGAATATACATCTAAGACAAAA
GACACAGACAAACCTAGTATGCTGGAGTTTAAATTATGTCCAGATGTGCTATTGAAGAATACAAGCACTG
TTGACAAGCAGGATTGTCCTGGTCCTGGTCCTGAGAAAGAGCAAGCACCTGTGCAAGTTTCAGGAATAAA
AAGTACAAAAGAAGACTGGTTAAAATGCATCCCTACAAGGACAAAGATGCCTGAATCAAGTCAAAGAGAT
AGTGCTGACTCAAGACTTTCTAAGAGAAGCCTCAGTGCAGATGAATTTGAAATACTACAAAACCCAGTAA
AAGAATCAAATATCATGTTCCGGACCTACAAAAAGATGTACCTTGAGAAGAGAAGCAGAAGCCTCGGGAG
TAGTCCAGTTAAATAG

Translation (1521 aa):
MNWNTKQENVPKPPPYSKTQSSILQHFLMTSTTSQSSFNYSPHNQEASQTSFNYSLHNQEACMYSGNSNS
VSQPLLSGRNYITPQTQISVSNMPTRTIVASQSSMERVVSTNGKGPQQPNHNLQTVSSGIMQNVWLPSHT
EATISHNPDGGTNMPYMHPPQNQLVTSDTYSMQLQMAPLHSGKVPMTHQGSQGLNHFIPDQLVDWTQYTS
NELSYPEYRPPPKQYSYILPATTSLQVKNNQLPTYTQSLQSKHSVPLSSHQYAAEASKRLSALPYSCRYE
NQHVQNAQPVSKHLPMEVPQSSEVHSSEKKKDTYRGFKQQWQNPNEKVSIGQFSEVKINIKQPYSESVRP
SGDGVQALVQNNQEKRKYTYNPNTNQVIDTNATKEKLVRDIKSLVEIKKKFSELARKIKINKSLLMAAGC
SKTANTSYTEPIQHSEFSAKEMSAKNGNDCSMELLATCLSLWKNQPSKTTEENVPKPLEEKQCNTSRIST
TVVGSANPTNEVHVKSLCSGVGNSQKMMSSSQTVLPVLIPSCESSGVAVGKGTELQIAVVSPLVLSDTNT
LPGKDSVPEVLPETLYPVVKEGSVCSLQTQPTETVALPFDVIGAVASNNISAEIPLPVDKEKQHKPIQGD
PDIADSSLGKHSPLGTEVLPKPMDSTIVSGPMLQIESICSLAEGDVSYNSQIAEIFNSVQTEPQKPSPNQ
VIDSQQEQVYDTTENKDFSLQKDKCVQCTDVPHEVPEQPEPLQPEEPASSEYVEANREATEESCREYTGR
KESTAKDVCLPAAIQQDPHPRETDMFSKSDHSLPAINEINDESEPISYLHDQLSELLKEFPYGIETFNRH
EVSLDQQKTHKIVENQTGGKTSNVSGDSTDQIKITVLNSEQIKELFPEDDQPCDKLAEPENKEIVAEVKS
PCDSQIPREESHDLGMLDPEKDKIHCCALGWLSMVYEGVPQCHCSSTEKKEKDQCLDINSSKQGEQPCNS
GITIFEINPVSNNSKTPLTQATEEGHFSAVHGEKTKASKTKDNREGQELACHFSAKCYKKDKKGNFKIRH
DTSLKMEQKLKNISSKCDIPNPSKCNKIAAPEILHVTTSNSAKNMPFSKQASQESLQKKHTSQDLGPVKA
PIELSSNTDPCRSNTSSVQSVSPEKKKLKFKAGGSRLKYFEKRKTDHVIIPDVEIKKKKYEKQEQNKNAG
DTLKLCSILTESNERASVQEKTVPSPESSDPKGSSSKSTRVITVQEYLQRQKDKQITGNNASRNICVETV
LCDSGHTKTSKHSAAVSWGKLVEGQSISAETAKELEHNSSSHGKDFKIHHSEASRTHSVSNNNKGKFDGK
QPDKMFKNKTSMNNESNQMPLQVKEQRKQYLNRVAFKCTERESICLTKLDSASKKLSIEKKSGEYTSKTK
DTDKPSMLEFKLCPDVLLKNTSTVDKQDCPGPGPEKEQAPVQVSGIKSTKEDWLKCIPTRTKMPESSQRD
SADSRLSKRSLSADEFEILQNPVKESNIMFRTYKKMYLEKRSRSLGSSPVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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