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Report for CCDS786.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
786.1 Public Homo sapiens 1 SLC25A24 24 110 108 CCDS HistoryNCBI Gene:29957Re-query CCDS DB by CCDS ID:786.1Re-query CCDS DB by GeneID:29957See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 786.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370041.4 ENSP00000359058.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370041.4Link to Ensembl Protein Viewer:ENSP00000359058.4Re-query CCDS DB by Nucleotide ID:ENST00000370041Re-query CCDS DB by Protein ID:ENSP00000359058
Original member Current member NCBI NM_213651.3 NP_998816.1 Accepted alive Link to Nucleotide Sequence:NM_213651.3Link to Protein Sequence:NP_998816.1Re-query CCDS DB by Nucleotide ID:NM_213651Re-query CCDS DB by Protein ID:NP_998816Link to BLAST:NP_998816.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_998816.1 458 Q6NUK1-2 458 100% 0 0

Chromosomal Locations for CCDS 786.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 108136653 108136837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108139058 108139208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108143543 108143710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108148279 108148386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108154983 108155135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108157462 108157620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108161182 108161293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108181941 108182028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108185828 108185954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108192496 108192621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1377 nt):
ATGGACTCCCTCTACGGAGATCTCTTTTGGTACCTGGACTATAACAAGGATGGGACCTTGGACATTTTTG
AGCTTCAGGAAGGCCTGGAGGATGTAGGGGCCATTCAATCTCTAGAGGAAGCGAAGAAAATTTTTACTAC
TGGAGATGTCAACAAAGATGGGAAGCTGGATTTTGAAGAATTTATGAAGTACCTTAAAGACCATGAGAAG
AAAATGAAATTGGCATTTAAGAGTTTAGACAAAAATAATGATGGAAAAATTGAGGCTTCAGAAATTGTCC
AGTCTCTCCAGACACTGGGTCTGACTATTTCTGAACAACAAGCAGAGTTGATTCTTCAAAGCATTGATGT
TGATGGGACAATGACAGTGGACTGGAATGAATGGAGAGACTACTTCTTATTTAATCCTGTTACAGACATT
GAGGAAATTATCCGTTTCTGGAAACATTCTACAGGAATTGACATAGGGGATAGCTTAACTATTCCAGATG
AATTCACGGAAGACGAAAAAAAATCCGGACAATGGTGGAGGCAGCTTTTGGCAGGAGGCATTGCTGGTGC
TGTCTCTCGAACAAGCACTGCCCCTTTGGACCGTCTGAAAATCATGATGCAGGTTCACGGTTCAAAATCA
GACAAAATGAACATATTTGGTGGCTTTCGACAGATGGTAAAAGAAGGAGGTATCCGCTCGCTTTGGAGGG
GAAATGGTACAAACGTCATCAAAATTGCTCCTGAGACAGCTGTTAAATTCTGGGCATATGAACAGTACAA
GAAGTTACTTACTGAAGAAGGACAAAAAATAGGAACATTTGAGAGATTTATTTCTGGTTCCATGGCTGGA
GCAACTGCACAGACTTTTATATATCCAATGGAGGTTATGAAAACCAGGCTGGCTGTAGGCAAAACTGGGC
AGTACTCTGGAATATATGATTGTGCCAAGAAGATTTTGAAACATGAAGGCTTGGGAGCTTTTTACAAAGG
CTATGTTCCCAATTTATTAGGTATCATACCTTATGCAGGCATAGATCTTGCTGTGTATGAGCTCTTGAAG
TCCTATTGGCTGGATAATTTTGCAAAAGATTCTGTAAACCCTGGAGTCATGGTGTTGCTGGGATGCGGTG
CCTTATCCAGCACCTGTGGTCAGCTGGCCAGCTACCCATTGGCTTTGGTGAGAACTCGCATGCAGGCTCA
AGCCATGTTAGAAGGTTCCCCACAGCTGAATATGGTTGGCCTCTTTCGACGAATTATTTCCAAAGAAGGA
ATACCAGGACTTTACAGAGGCATCACCCCAAACTTCATGAAGGTGCTCCCTGCTGTAGGCATCAGTTATG
TGGTTTATGAAAATATGAAGCAAACTTTAGGAGTAACCCAGAAATGA

Translation (458 aa):
MDSLYGDLFWYLDYNKDGTLDIFELQEGLEDVGAIQSLEEAKKIFTTGDVNKDGKLDFEEFMKYLKDHEK
KMKLAFKSLDKNNDGKIEASEIVQSLQTLGLTISEQQAELILQSIDVDGTMTVDWNEWRDYFLFNPVTDI
EEIIRFWKHSTGIDIGDSLTIPDEFTEDEKKSGQWWRQLLAGGIAGAVSRTSTAPLDRLKIMMQVHGSKS
DKMNIFGGFRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERFISGSMAG
ATAQTFIYPMEVMKTRLAVGKTGQYSGIYDCAKKILKHEGLGAFYKGYVPNLLGIIPYAGIDLAVYELLK
SYWLDNFAKDSVNPGVMVLLGCGALSSTCGQLASYPLALVRTRMQAQAMLEGSPQLNMVGLFRRIISKEG
IPGLYRGITPNFMKVLPAVGISYVVYENMKQTLGVTQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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