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Report for CCDS5378.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5378.2 Public Homo sapiens 7 KLHL7 24 110 108 CCDS HistoryNCBI Gene:55975Re-query CCDS DB by CCDS ID:5378.2Re-query CCDS DB by GeneID:55975See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 5378.1
The coding region has been updated to represent an alternate splice pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 5378.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409689.5 ENSP00000386263.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409689.5Link to Ensembl Protein Viewer:ENSP00000386263.1Re-query CCDS DB by Nucleotide ID:ENST00000409689Re-query CCDS DB by Protein ID:ENSP00000386263
Original member Current member NCBI NM_018846.5 NP_061334.4 Accepted alive Link to Nucleotide Sequence:NM_018846.5Link to Protein Sequence:NP_061334.4Re-query CCDS DB by Nucleotide ID:NM_018846Re-query CCDS DB by Protein ID:NP_061334Link to BLAST:NP_061334.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061334.4 538 Q8IXQ5-5 538 100% 0 0

Chromosomal Locations for CCDS 5378.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 23123801 23123879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23124688 23124781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23125048 23125172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23140769 23140944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23143851 23144025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23152067 23152209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23165698 23165938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23167836 23168037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23172948 23173045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 23174015 23174298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1617 nt):
ATGGTCCAGGAAAGAAAGATACCTGCTCATCGTGTTGTTCTTGCTGCAGCCAGTCATTTTTTTAACTTAA
TGTTCACAACTAACATGCTTGAATCAAAGTCCTTTGAAGTAGAACTCAAAGATGCTGAACCTGATATTAT
TGAACAACTGGTGGAATTTGCTTATACTGCTAGAATTTCCGTGAATAGCAACAATGTTCAGTCTTTGCTG
GATGCAGCAAACCAATATCAGATTGAACCTGTGAAGAAAATGTGTGTTGATTTTTTGAAAGAACAAGTTG
ATGCTTCAAATTGTCTTGGTATAAGTGTGCTAGCGGAGTGTCTAGATTGTCCTGAATTGAAAGCAACTGC
AGATGACTTTATTCATCAGCACTTTACTGAAGTTTACAAAACTGATGAATTTCTTCAACTTGATGTCAAG
CGAGTAACACATCTTCTCAACCAGGACACTCTGACTGTGAGAGCAGAGGATCAGGTTTATGATGCTGCAG
TCAGGTGGTTGAAATACGATGAACCTAATCGCCAGCCATTTATGGTTGATATCCTTGCTAAAGTCAGGTT
TCCTCTTATATCAAAGAATTTCTTAAGTAAAACGGTACAAGCTGAACCACTTATTCAAGACAATCCTGAA
TGCCTTAAGATGGTGATAAGTGGAATGAGGTACCATCTACTGTCTCCAGAGGACCGAGAAGAACTTGTAG
ATGGCACAAGACCTAGAAGAAAGAAACATGACTACCGCATAGCCCTATTTGGAGGCTCTCAACCACAGTC
TTGTAGATATTTTAACCCAAAGGATTATAGCTGGACAGACATCCGCTGCCCCTTTGAAAAACGAAGAGAT
GCAGCATGCGTGTTTTGGGACAATGTAGTATACATTTTGGGAGGCTCTCAGCTTTTCCCAATAAAGCGAA
TGGACTGCTATAATGTAGTGAAGGATAGCTGGTATTCGAAACTGGGTCCTCCGACACCTCGAGACAGCCT
TGCTGCATGTGCTGCAGAAGGCAAAATTTATACATCTGGAGGTTCAGAAGTAGGAAACTCAGCTCTGTAT
TTATTTGAGTGCTATGATACGAGAACTGAAAGCTGGCACACAAAGCCCAGCATGCTGACCCAGCGCTGCA
GCCATGGGATGGTGGAAGCCAATGGCCTAATCTATGTTTGTGGTGGAAGTTTAGGAAACAATGTTTCTGG
GAGAGTGCTTAATTCCTGTGAAGTTTATGATCCTGCCACAGAAACATGGACTGAGCTGTGTCCAATGATT
GAAGCCAGGAAGAATCATGGGCTGGTATTTGTAAAAGACAAGATATTTGCTGTGGGTGGTCAGAATGGTT
TAGGTGGTCTGGACAATGTGGAATATTACGATATTAAGTTGAACGAATGGAAGATGGTCTCACCAATGCC
ATGGAAGGGTGTAACAGTGAAATGTGCAGCAGTTGGCTCTATAGTTTATGTCTTGGCTGGTTTTCAGGGT
GTTGGTCGATTAGGACACATTCTCGAATATAATACCGAAACAGACAAATGGGTTGCCAACTCCAAAGTTC
GTGCTTTTCCAGTCACAAGTTGTTTAATTTGTGTTGTCGATACTTGTGGAGCAAATGAAGAGACCCTTGA
AACATGA

Translation (538 aa):
MVQERKIPAHRVVLAAASHFFNLMFTTNMLESKSFEVELKDAEPDIIEQLVEFAYTARISVNSNNVQSLL
DAANQYQIEPVKKMCVDFLKEQVDASNCLGISVLAECLDCPELKATADDFIHQHFTEVYKTDEFLQLDVK
RVTHLLNQDTLTVRAEDQVYDAAVRWLKYDEPNRQPFMVDILAKVRFPLISKNFLSKTVQAEPLIQDNPE
CLKMVISGMRYHLLSPEDREELVDGTRPRRKKHDYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRD
AACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALY
LFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMI
EARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQG
VGRLGHILEYNTETDKWVANSKVRAFPVTSCLICVVDTCGANEETLET


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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