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Report for CCDS46861.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46861.2 Public Homo sapiens 3 ATXN7 24 110 108 CCDS HistoryNCBI Gene:6314Re-query CCDS DB by CCDS ID:46861.2Re-query CCDS DB by GeneID:6314See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 46861.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46861.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000484332.1 ENSP00000428277.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000484332.1Link to Ensembl Protein Viewer:ENSP00000428277.1Re-query CCDS DB by Nucleotide ID:ENST00000484332Re-query CCDS DB by Protein ID:ENSP00000428277
Original member Current member NCBI NM_001128149.3 NP_001121621.2 Accepted alive Link to Nucleotide Sequence:NM_001128149.3Link to Protein Sequence:NP_001121621.2Re-query CCDS DB by Nucleotide ID:NM_001128149Re-query CCDS DB by Protein ID:NP_001121621Link to BLAST:NP_001121621.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001121621.2 747 O15265-3 747 100% 0 0

Chromosomal Locations for CCDS 46861.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 63967912 63967975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63979915 63980167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63982186 63982445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63982939 63983021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63988059 63988324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63990176 63990374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63990738 63990859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63995505 63996483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63999450 63999467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2244 nt):
ATGGAAGGTAGCAAGACGCCTCTCCAAAGCAGCCCTTCTGCGCAGGAGCTGAAAGCTCCACTGGAAAGAA
GACATAGCTCATCCAGCAAGCCGCCTTTGGCCGTTCCTCCCACTTCAGTATTTTCCTTCTTCCCTTCTCT
GTCCAAAAGCAAAGGAGGCAGTGCAAGTGGAAGCAACCGTTCTTCCAGTGGAGGTGTTCTTAGCGCATCC
TCATCAAGTTCCAAGTTGTTGAAATCACCCAAAGAGAAACTGCAGCTCAGGGGGAACACCAGGCCAATGC
ATCCCATTCAGCAAAGTAGAGTTCCCCATGGTAGAATCATGACACCCTCTGTGAAAGTGGAAAAGATTCA
TCCGAAAATGGATGGCACACTACTGAAATCTGCGGTGGGGCCAACCTGTCCTGCTACTGTGAGTTCCTTA
GTCAAGCCTGGCCTTAACTGCCCCTCAATACCAAAGCCAACCTTGCCTTCACCTGGACAGATTCTGAATG
GCAAAGGGCTTCCTGCACCGCCCACTCTGGAAAAGAAACCTGAAGACAATTCCAATAATAGGAAATTTTT
AAATAAGAGATTATCAGAAAGAGAGTTTGATCCTGACATCCACTGTGGGGTTATTGATCTCGACACCAAG
AAGCCCTGCACCCGGTCTTTGACATGCAAGACACATTCCTTAACCCAGCGCAGGGCTGTCCAGGGTAGAA
GAAAACGATTTGATGTGTTATTAGCCGAGCACAAAAACAAAACCAGGGAAAAGGAATTGATTCGCCATCC
GGACTCTCAGCAACCACCGCAGCCTCTCAGGGACCCGCATCCCGCCCCTCCTAGAACGTCACAGGAGCCG
CACCAAAACCCTCACGGAGTGATTCCTTCCGAATCAAAGCCTTTTGTAGCTAGTAAACCTAAACCTCACA
CCCCCAGTCTTCCAAGGCCTCCAGGCTGCCCTGCTCAGCAAGGTGGGAGTGCCCCCATTGACCCTCCTCC
AGTCCATGAATCTCCACACCCTCCCCTGCCTGCCACTGAGCCAGCTTCTCGGTTATCCAGTGAGGAGGGC
GAAGGCGATGACAAAGAAGAGTCTGTTGAAAAACTGGACTGTCATTATTCAGGTCATCATCCTCAGCCAG
CATCTTTTTGCACATTTGGGAGCCGGCAGATAGGAAGAGGCTATTACGTGTTTGACTCCAGGTGGAATCG
ACTTCGCTGCGCCCTCAACCTCATGGTGGAGAAGCATCTGAATGCACAGCTATGGAAGAAAATCCCACCA
GTGCCCAGTACCACCTCACCCATCTCCACACGTATTCCTCACCGGACAAACTCTGTGCCGACATCACAAT
GTGGAGTCAGCTATCTGGCAGCAGCCACCGTCTCTACATCCCCAGTCCTGCTCTCATCTACCTGCATCTC
CCCAAATAGCAAATCGGTACCAGCTCATGGAACCACACTAAATGCACAGCCTGCTGCTTCAGGGGCGATG
GATCCTGTGTGCAGTATGCAATCCAGACAAGTGTCCTCTTCATCCTCATCCCCTTCCACGCCCTCTGGCC
TTTCCTCGGTTCCTTCCTCCCCCATGTCCAGGAAACCTCAGAAATTGAAATCCAGCAAATCTTTGAGGCC
CAAGGAGTCTTCTGGTAACAGCACTAACTGTCAAAATGCCAGTAGCAGTACCAGTGGCGGCTCAGGAAAG
AAACGCAAAAACAGTTCCCCACTGTTGGTTCACTCTTCCTCCTCCTCTTCCTCCTCCTCCTCTTCTTCTC
ATTCCATGGAGTCTTTTAGGAAAAACTGTGTGGCTCACTCTGGGCCTCCCTACCCCTCAACGGTAACATC
TTCCCATAGCATCGGCCTCAACTGTGTGACGAATAAAGCAAATGCGGTGAACGTCCGGCATGACCAGTCA
GGGAGGGGCCCCCCCACCGGGAGCCCTGCTGAATCCATCAAGAGGATGAGTGTGATGGTGAACAGCAGTG
ATTCTACTCTTTCTCTTGGGCCATTCATTCACCAGTCCAATGAACTGCCTGTCAACTCCCACGGCAGTTT
TTCCCACTCACACACTCCTCTAGACAAACTCATAGGAAAGAAAAGAAAGTGCTCACCCAGCTCGAGCAGC
ATCAACAACAGCAGCAGCAAACCCACAAAGGTTGCCAAAGTGCCAGCCGTGAACAATGTCCACATGAAAC
ACACAGGCACCATCCCAGGGGCACAAGGACTGATGAACAGTTCCCTCCTTCATCAGCCAAAGGCACGTCC
CTGA

Translation (747 aa):
MEGSKTPLQSSPSAQELKAPLERRHSSSSKPPLAVPPTSVFSFFPSLSKSKGGSASGSNRSSSGGVLSAS
SSSSKLLKSPKEKLQLRGNTRPMHPIQQSRVPHGRIMTPSVKVEKIHPKMDGTLLKSAVGPTCPATVSSL
VKPGLNCPSIPKPTLPSPGQILNGKGLPAPPTLEKKPEDNSNNRKFLNKRLSEREFDPDIHCGVIDLDTK
KPCTRSLTCKTHSLTQRRAVQGRRKRFDVLLAEHKNKTREKELIRHPDSQQPPQPLRDPHPAPPRTSQEP
HQNPHGVIPSESKPFVASKPKPHTPSLPRPPGCPAQQGGSAPIDPPPVHESPHPPLPATEPASRLSSEEG
EGDDKEESVEKLDCHYSGHHPQPASFCTFGSRQIGRGYYVFDSRWNRLRCALNLMVEKHLNAQLWKKIPP
VPSTTSPISTRIPHRTNSVPTSQCGVSYLAAATVSTSPVLLSSTCISPNSKSVPAHGTTLNAQPAASGAM
DPVCSMQSRQVSSSSSSPSTPSGLSSVPSSPMSRKPQKLKSSKSLRPKESSGNSTNCQNASSSTSGGSGK
KRKNSSPLLVHSSSSSSSSSSSSHSMESFRKNCVAHSGPPYPSTVTSSHSIGLNCVTNKANAVNVRHDQS
GRGPPTGSPAESIKRMSVMVNSSDSTLSLGPFIHQSNELPVNSHGSFSHSHTPLDKLIGKKRKCSPSSSS
INNSSSKPTKVAKVPAVNNVHMKHTGTIPGAQGLMNSSLLHQPKARP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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