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Report for CCDS38126.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38126.1 Public Mus musculus 2 Ly75 23 108 98 CCDS HistoryNCBI Gene:17076Re-query CCDS DB by CCDS ID:38126.1Re-query CCDS DB by GeneID:17076See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38126.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028362.8 ENSMUSP00000028362.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028362.8Link to Ensembl Protein Viewer:ENSMUSP00000028362.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000028362Re-query CCDS DB by Protein ID:ENSMUSP00000028362
Original member Current member NCBI NM_013825.4 NP_038853.2 Accepted alive Link to Nucleotide Sequence:NM_013825.4Link to Protein Sequence:NP_038853.2Re-query CCDS DB by Nucleotide ID:NM_013825Re-query CCDS DB by Protein ID:NP_038853Link to BLAST:NP_038853.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038853.2 1723 Q60767 1723 100% 0 0

Chromosomal Locations for CCDS 38126.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 60293760 60293938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60299047 60299214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60300955 60301077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60303578 60303727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60306330 60306498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60308139 60308365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60311609 60311803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60314157 60314273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60316089 60316256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60318308 60318473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60321698 60321924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60323819 60323948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60327787 60327947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60328390 60328495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60329976 60330115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60330726 60330808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60331077 60331144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60332319 60332494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60332925 60332960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60334450 60334564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60338295 60338363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60340153 60340234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60348353 60348495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60349858 60350057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60352056 60352225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60352354 60352442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60352922 60353032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60354405 60354562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60355369 60355560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60357277 60357417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60358468 60358578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60365011 60365175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60368759 60368929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60375858 60376229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60383138 60383231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5172 nt):
ATGCGGACGGGCCGGGTGACCCCGGGCCTGGCGGCGGGGCTACTCCTGCTGTTGCTGCGGTCCTTCGGGC
TTGTGGAGCCTTCTGAGAGCTCAGGTAATGATCCATTCACCATCGTCCATGAAAACACTGGCAAGTGCAT
CCAGCCGCTGTCTGACTGGGTAGTGGCCCAGGACTGTAGCGGAACTAACAACATGTTGTGGAAGTGGGTG
TCCCAGCACCGCCTCTTTCACCTGGAATCCCAGAAGTGCCTCGGCCTCGATATTACCAAAGCCACGGACA
ACCTGCGAATGTTCAGCTGTGACTCCACCGTCATGCTGTGGTGGAAATGTGAGCACCATTCGCTGTACAC
CGCTGCCCAGTACAGGCTAGCTCTGAAAGATGGATATGCCGTAGCCAATACGAATACATCTGATGTCTGG
AAGAAGGGAGGCTCCGAGGAAAACCTTTGTGCCCAGCCTTATCATGAGATATACACCAGAGATGGGAATT
CCTACGGGAGACCTTGTGAATTCCCTTTCTTGATTGGTGAGACATGGTACCATGACTGCATTCATGATGA
AGATCATAGTGGGCCATGGTGTGCCACTACCCTAAGTTATGAATATGATCAAAAGTGGGGCATCTGCCTA
CTACCAGAAAGTGGCTGTGAAGGTAACTGGGAAAAGAATGAGCAGATTGGAAGTTGCTACCAATTTAATA
ATCAGGAAATTCTGTCTTGGAAAGAAGCTTATGTTTCCTGTCAGAACCAAGGAGCTGACTTACTGAGCAT
CCACAGTGCTGCCGAATTAGCCTACATTACGGGAAAAGAGGACATTGCTAGACTTGTTTGGCTTGGACTG
AATCAGCTCTATTCTGCGAGAGGTTGGGAATGGTCAGACTTCAGGCCACTCAAATTTCTTAACTGGGATC
CAGGCACGCCCGTTGCACCTGTGATTGGTGGGTCAAGCTGTGCCAGAATGGACACAGAGTCCGGGCTGTG
GCAAAGTGTTTCCTGTGAATCTCAGCAGCCTTACGTCTGCAAGAAGCCACTGAACAACACGCTGGAGCTC
CCAGATGTTTGGACTTACACAGATACCCACTGCCATGTGGGCTGGCTGCCAAATAATGGGTTTTGCTATC
TGCTGGCGAATGAAAGTAGTTCCTGGGATGCAGCACATTTGAAATGCAAAGCCTTCGGTGCAGACCTCAT
CAGCATGCACTCCTTAGCAGATGTGGAGGTGGTTGTCACGAAACTCCATAATGGGGATGTCAAAAAAGAA
ATATGGACAGGCCTTAAAAACACAAACAGCCCTGCTTTGTTCCAGTGGTCGGACGGAACGGAAGTTACTC
TAACGTACTGGAATGAGAATGAGCCGAGTGTTCCCTTCAACAAGACTCCCAACTGTGTTTCCTATTTAGG
AAAGTTAGGTCAGTGGAAAGTCCAGTCCTGTGAGAAGAAACTCAGATATGTATGCAAGAAAAAGGGAGAA
ATAACTAAGGATGCAGAGTCGGATAAGCTGTGTCCGCCAGACGAGGGCTGGAAGAGACATGGAGAAACCT
GTTACAAGATTTATGAGAAAGAGGCCCCTTTCGGAACGAACTGCAACCTGACCATCACTAGCAGGTTCGA
GCAGGAATTCTTGAATTATATGATGAAGAACTATGATAAGTCCCTTCGGAAGTACTTCTGGACTGGCCTG
AGAGACCCTGACTCTCGAGGAGAATACAGTTGGGCCGTTGCTCAGGGAGTAAAGCAGGCTGTGACCTTTT
CCAACTGGAATTTTCTTGAACCGGCGTCTCCAGGCGGGTGCGTGGCTATGTCTACTGGAAAGACTCTTGG
CAAGTGGGAAGTGAAGAACTGCAGAAGCTTCCGTGCTCTTTCAATATGCAAGAAAGTGAGCGAACCCCAG
GAGCCTGAAGAAGCAGCCCCCAAGCCCGACGACCCCTGTCCTGAAGGCTGGCACACTTTCCCCTCCAGCC
TTTCTTGTTATAAGGTGTTCCATATAGAAAGAATCGTAAGAAAGAGGAACTGGGAAGAAGCCGAAAGGTT
CTGCCAAGCCCTTGGAGCTCACCTACCCAGCTTCAGTCGTAGAGAGGAAATTAAGGACTTTGTGCATTTG
TTAAAGGACCAGTTCAGTGGGCAGCGTTGGTTGTGGATTGGTCTGAATAAGAGAAGCCCTGATTTACAAG
GGTCCTGGCAGTGGAGTGACCGGACACCAGTGTCTGCTGTGATGATGGAGCCGGAGTTTCAACAGGATTT
TGACATCAGAGACTGTGCTGCCATCAAGGTCCTTGATGTACCTTGGCGAAGAGTCTGGCATCTCTATGAG
GACAAGGACTATGCTTACTGGAAACCTTTTGCTTGTGATGCCAAGCTTGAGTGGGTGTGCCAGATTCCAA
AAGGTAGCACTCCCCAGATGCCAGACTGGTATAATCCAGAGCGCACTGGAATTCATGGGCCCCCAGTTAT
AATTGAAGGAAGTGAATACTGGTTTGTTGCTGATCCCCACTTAAACTACGAAGAAGCCGTCTTATACTGT
GCTAGCAATCACAGCTTTCTTGCCACGATAACATCGTTCACAGGACTAAAAGCTATCAAAAACAAACTAG
CAAATATTTCTGGCGAGGAACAGAAGTGGTGGGTGAAAACGAGTGAGAATCCAATTGATCGTTACTTTCT
AGGCTCGCGCCGCCGCCTGTGGCACCATTTCCCCATGACGTTTGGAGATGAATGTTTGCACATGTCAGCC
AAGACGTGGCTTGTTGACTTAAGTAAACGAGCGGACTGTAATGCCAAGTTGCCCTTCATCTGTGAAAGAT
ACAATGTCTCTTCATTAGAGAAATACAGCCCAGATCCTGCAGCCAAAGTACAGTGCACTGAGAAGTGGAT
TCCTTTTCAAAATAAGTGCTTCCTAAAGGTCAACTCTGGGCCCGTTACGTTTTCTCAAGCAAGCGGCATT
TGTCATTCCTACGGCGGCACCCTTCCTTCCGTGCTGAGCCGGGGTGAACAAGATTTCATTATATCCTTGC
TTCCTGAAATGGAAGCTAGTCTATGGATTGGTCTGCGCTGGACTGCCTACGAAAGGATAAACAGATGGAC
AGACAACAGAGAGCTGACCTACAGCAACTTTCACCCACTGCTGGTCGGTCGGAGGCTGAGCATACCAACG
AATTTCTTTGATGATGAGTCCCACTTCCACTGCGCCTTGATTCTTAATCTCAAAAAGTCACCGCTTACTG
GGACCTGGAATTTTACTTCCTGTTCAGAACGACACTCTCTGTCTCTCTGTCAAAAATACTCAGAGACTGA
AGACGGACAGCCCTGGGAGAACACTTCAAAAACAGTGAAGTATCTAAATAACCTATACAAAATCATCTCG
AAGCCCCTGACGTGGCACGGCGCTCTGAAGGAGTGCATGAAAGAGAAGATGAGGTTGGTGAGCATCACAG
ACCCTTACCAGCAGGCCTTCCTCGCAGTGCAGGCCACCCTGCGCAACAGCTCCTTCTGGATCGGACTCTC
CAGTCAAGATGATGAACTCAACTTTGGTTGGTCAGATGGGAAACGTCTTCAATTTAGTAACTGGGCTGGA
AGCAATGAGCAACTTGATGACTGCGTGATATTAGACACAGATGGATTCTGGAAAACAGCTGACTGTGATG
ATAACCAGCCTGGCGCCATTTGCTACTATCCAGGAAATGAGACTGAGGAGGAGGTCAGAGCACTGGACAC
TGCTAAATGCCCGTCTCCTGTACAGAGCACCCCATGGATACCATTCCAGAACTCCTGCTACAATTTCATG
ATTACCAACAACAGGCATAAGACAGTCACACCGGAGGAAGTGCAGTCCACGTGCGAGAAGCTGCATTCGA
AAGCACACAGTCTGAGCATTCGGAATGAGGAGGAGAATACCTTTGTTGTGGAACAGCTTCTGTACTTCAA
TTATATTGCCTCATGGGTCATGTTAGGAATAACCTATGAAAACAATTCTTTGATGTGGTTTGATAAAACT
GCATTGTCCTACACACACTGGAGAACGGGAAGACCAACTGTGAAAAATGGCAAATTTTTGGCTGGTCTAA
GTACTGATGGATTCTGGGATATTCAGTCTTTCAATGTTATTGAAGAAACACTTCATTTTTACCAGCACAG
TATTTCTGCTTGTAAAATTGAAATGGTTGACTATGAGGACAAACACAATGGCACCCTGCCACAGTTCATT
CCATATAAGGACGGCGTCTACAGCGTTATTCAGAAGAAGGTGACGTGGTATGAAGCATTGAACGCGTGCT
CTCAAAGTGGGGGAGAGTTGGCCAGTGTTCACAACCCAAATGGGAAGCTCTTTCTGGAAGACATTGTGAA
CCGTGACGGATTCCCTCTCTGGGTTGGGCTCTCAAGTCATGATGGAAGCGAATCGAGTTTCGAATGGTCC
GATGGCAGAGCATTTGACTATGTCCCATGGCAGAGCCTACAATCTCCCGGAGACTGTGTCGTCTTATATC
CAAAAGGAATTTGGAGACGTGAAAAATGCCTGTCTGTTAAGGATGGTGCTATTTGTTACAAGCCTACAAA
AGATAAAAAGCTGATCTTTCATGTAAAATCATCAAAATGTCCAGTGGCAAAGAGGGATGGTCCCCAGTGG
GTCCAGTATGGGGGCCACTGTTACGCTTCGGACCAGGTACTGCACAGCTTCTCAGAGGCCAAACAAGTGT
GTCAAGAGCTTGATCATTCGGCAACTGTTGTCACCATAGCAGATGAAAATGAGAATAAGTTTGTGAGCAG
ACTGATGAGGGAGAACTATAATATTACTATGAGAGTTTGGCTTGGCCTGTCTCAGCATTCACTCGATCAG
TCTTGGAGTTGGCTCGATGGATTAGATGTGACATTTGTCAAATGGGAAAATAAAACTAAGGATGGTGATG
GGAAATGTAGCATTTTAATAGCTTCAAATGAAACCTGGAGAAAAGTCCATTGCTCACGTGGCTATGCAAG
AGCTGTCTGCAAAATTCCTCTGAGCCCGGACTACACAGGCATAGCCATCCTGTTTGCCGTGCTGTGCCTC
TTAGGGCTCATCAGCTTGGCGATTTGGTTCCTCTTGCAACGATCCCATATCCGCTGGACCGGCTTCTCCT
CGGTTCGGTATGAACATGGAACCAACGAAGACGAGGTGATGCTCCCTTCTTTCCACGACTAA

Translation (1723 aa):
MRTGRVTPGLAAGLLLLLLRSFGLVEPSESSGNDPFTIVHENTGKCIQPLSDWVVAQDCSGTNNMLWKWV
SQHRLFHLESQKCLGLDITKATDNLRMFSCDSTVMLWWKCEHHSLYTAAQYRLALKDGYAVANTNTSDVW
KKGGSEENLCAQPYHEIYTRDGNSYGRPCEFPFLIGETWYHDCIHDEDHSGPWCATTLSYEYDQKWGICL
LPESGCEGNWEKNEQIGSCYQFNNQEILSWKEAYVSCQNQGADLLSIHSAAELAYITGKEDIARLVWLGL
NQLYSARGWEWSDFRPLKFLNWDPGTPVAPVIGGSSCARMDTESGLWQSVSCESQQPYVCKKPLNNTLEL
PDVWTYTDTHCHVGWLPNNGFCYLLANESSSWDAAHLKCKAFGADLISMHSLADVEVVVTKLHNGDVKKE
IWTGLKNTNSPALFQWSDGTEVTLTYWNENEPSVPFNKTPNCVSYLGKLGQWKVQSCEKKLRYVCKKKGE
ITKDAESDKLCPPDEGWKRHGETCYKIYEKEAPFGTNCNLTITSRFEQEFLNYMMKNYDKSLRKYFWTGL
RDPDSRGEYSWAVAQGVKQAVTFSNWNFLEPASPGGCVAMSTGKTLGKWEVKNCRSFRALSICKKVSEPQ
EPEEAAPKPDDPCPEGWHTFPSSLSCYKVFHIERIVRKRNWEEAERFCQALGAHLPSFSRREEIKDFVHL
LKDQFSGQRWLWIGLNKRSPDLQGSWQWSDRTPVSAVMMEPEFQQDFDIRDCAAIKVLDVPWRRVWHLYE
DKDYAYWKPFACDAKLEWVCQIPKGSTPQMPDWYNPERTGIHGPPVIIEGSEYWFVADPHLNYEEAVLYC
ASNHSFLATITSFTGLKAIKNKLANISGEEQKWWVKTSENPIDRYFLGSRRRLWHHFPMTFGDECLHMSA
KTWLVDLSKRADCNAKLPFICERYNVSSLEKYSPDPAAKVQCTEKWIPFQNKCFLKVNSGPVTFSQASGI
CHSYGGTLPSVLSRGEQDFIISLLPEMEASLWIGLRWTAYERINRWTDNRELTYSNFHPLLVGRRLSIPT
NFFDDESHFHCALILNLKKSPLTGTWNFTSCSERHSLSLCQKYSETEDGQPWENTSKTVKYLNNLYKIIS
KPLTWHGALKECMKEKMRLVSITDPYQQAFLAVQATLRNSSFWIGLSSQDDELNFGWSDGKRLQFSNWAG
SNEQLDDCVILDTDGFWKTADCDDNQPGAICYYPGNETEEEVRALDTAKCPSPVQSTPWIPFQNSCYNFM
ITNNRHKTVTPEEVQSTCEKLHSKAHSLSIRNEEENTFVVEQLLYFNYIASWVMLGITYENNSLMWFDKT
ALSYTHWRTGRPTVKNGKFLAGLSTDGFWDIQSFNVIEETLHFYQHSISACKIEMVDYEDKHNGTLPQFI
PYKDGVYSVIQKKVTWYEALNACSQSGGELASVHNPNGKLFLEDIVNRDGFPLWVGLSSHDGSESSFEWS
DGRAFDYVPWQSLQSPGDCVVLYPKGIWRREKCLSVKDGAICYKPTKDKKLIFHVKSSKCPVAKRDGPQW
VQYGGHCYASDQVLHSFSEAKQVCQELDHSATVVTIADENENKFVSRLMRENYNITMRVWLGLSQHSLDQ
SWSWLDGLDVTFVKWENKTKDGDGKCSILIASNETWRKVHCSRGYARAVCKIPLSPDYTGIAILFAVLCL
LGLISLAIWFLLQRSHIRWTGFSSVRYEHGTNEDEVMLPSFHD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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