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Report for CCDS19304.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19304.1 Public Mus musculus 5 Fam114a1 23 108 98 CCDS HistoryNCBI Gene:68303Re-query CCDS DB by CCDS ID:19304.1Re-query CCDS DB by GeneID:68303See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19304.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031080.14 ENSMUSP00000031080.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031080.14Link to Ensembl Protein Viewer:ENSMUSP00000031080.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031080Re-query CCDS DB by Protein ID:ENSMUSP00000031080
Original member NCBI NM_026667.3 NP_080943.3 Updated not alive Link to Nucleotide Sequence:NM_026667.3Link to Protein Sequence:NP_080943.3Re-query CCDS DB by Nucleotide ID:NM_026667Re-query CCDS DB by Protein ID:NP_080943
Current member NCBI NM_026667.4 NP_080943.3 Accepted alive Link to Nucleotide Sequence:NM_026667.4Link to Protein Sequence:NP_080943.3Re-query CCDS DB by Nucleotide ID:NM_026667Re-query CCDS DB by Protein ID:NP_080943Link to BLAST:NP_080943.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080943.3 569 Q9D281 569 100% 0 0

Chromosomal Locations for CCDS 19304.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 64979716 64980063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64995815 64995902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65005798 65005911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65006034 65006143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65008988 65009122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65015316 65015468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65021602 65021725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65028410 65028501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65030065 65030226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65031255 65031394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65034372 65034444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65038688 65038741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65040624 65040740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1710 nt):
ATGTCTGATGATGCTCGTGACACCATAGCCAATGGAGTCGGAGAAGATGCTGCTGAGATGCCCAACAGTG
ACTCCCCTGCTGAAGATGCAGCAGAAGTGCAGTGTGGTCCAGCTACAACTTCAAATGAACCAGCACCAGA
TGACCACATGGAAGAGCAGCCTGAGATCACAGCTATGTGTGCAGAGTCCACCCCTCCAGGGATTCTAGAC
CAATCCAAGGCCAGTGCTGCCGACGAGACCCCCCTCAATGGAGAAGTAACTGAAGACACCCTGGTTGAGT
GCGTTGATTCCGTCAGCCTCGAGGGAGACACCGGATCTGAAATACCTCTGAAAGAACAGGATGACGCGGC
TGTGGACCCCTCATCACAGGCAGGAAGATGGGCAGGCTGGGGATCCTGGGGGAAATCTCTGCTCTCATCT
GCATCAGCCACAGTAGGTCATGGATTAACAGCAGTCAAAGAAAAGGCAGGGGCAACCCTACGAATCCACA
GTGCCAATTCTGCATCTCCCGAAGGGGCCCCAACTGATGCTGAAAACGGAATCTCTGGAAATGTGACTCC
AGATCAGGACCCTGCCAGAGGCCCCCACACTCCTCCTCCACCAGGGGCGGCAGGGTCGAGAGGCATGCTG
TCAGCCCTCACCAATGTGGTTCAAAACACGGGCAAAAGCGTCTTAACCGGAGGTCTGGATGCTTTAGAAT
TCATTGGCAAGAAAACCATGATTGTCCTCGCAGAAAGCGACCCAGGGTTTAAGCGGACCAAGACACTGAT
GGAACGAACTGTCTCCTTGTCCCAGATGTTGAGAGAAGCCAAGGAGAAGGAGAAGCAGAGGTTGGCCCAG
CAGCTCACAGTGGAGAGGACTGCACACTATGGGATGCTGTTTGATGAATATCAAGGTTTGTCACACCTGG
AAGCCCTGGAAATTCTGTCCAATGAGAGTGAGAGCAAGGTTCAGTCCTTCTTAACATCCCTGGATGGAGA
GAAGCTAGAACTCTTGAAAAATGACCTAATTTCAATCAAGGACATCTTTGTAGCCAAAGAATCAGAGAAT
GAAGCAAACCCAGAAGAACAAGGCCTAGAAGAAAGCGGGGAAGAATTTGCCAGGATGCTTACAGAGCTCC
TGTTTGAATTACACGTCGCCGCCACACCTGACAAACTCAATAAGGCCATGAAGAAAGCTCATGACTGGGT
GGAAGAAGATCAAAGCGTGGTGTCGATAGATGTGGCCAAAGGGTCGGAGGAGGAAGAGAAGGAAGAAGGA
AAGGAAGAGAAAGCCGAAGAACCTGAAGAAGACAAAACAGGGGGCCAAGGAGCTAAGACTGTAGAGGAAG
TGTACATGCTGTCCATTGAAAGTCTGGCTGAAGTCACTGCACGCTGCATTGAACAGCTACATAAGGTTGC
AGAGTTGATTCTCCATGGACAAGAGGAGGAGAAACCAGCTCAAGACCAAGCAAGAGTTCTGATAAAATTA
ACCACAGCAATGTGCAATGAAGTAACCTCCTTATCGAAGAAGTTTACAAATTCTTTAACCACTGTTGGGA
GCAACAAGAAGGCTGAAGTCCTTAACCCCATGATCAATAGTGTGTTTTTAGAGGGCTCCAATAGCACCAC
ATATGTGCAGGACGCCCTCCAGCTGCTGCTCCCGGTACTGCAGGTCTCCCACATCCGCACCAGCTGTTTG
AAAGCTACAGCCCAGCCAGATTGCAGCTAG

Translation (569 aa):
MSDDARDTIANGVGEDAAEMPNSDSPAEDAAEVQCGPATTSNEPAPDDHMEEQPEITAMCAESTPPGILD
QSKASAADETPLNGEVTEDTLVECVDSVSLEGDTGSEIPLKEQDDAAVDPSSQAGRWAGWGSWGKSLLSS
ASATVGHGLTAVKEKAGATLRIHSANSASPEGAPTDAENGISGNVTPDQDPARGPHTPPPPGAAGSRGML
SALTNVVQNTGKSVLTGGLDALEFIGKKTMIVLAESDPGFKRTKTLMERTVSLSQMLREAKEKEKQRLAQ
QLTVERTAHYGMLFDEYQGLSHLEALEILSNESESKVQSFLTSLDGEKLELLKNDLISIKDIFVAKESEN
EANPEEQGLEESGEEFARMLTELLFELHVAATPDKLNKAMKKAHDWVEEDQSVVSIDVAKGSEEEEKEEG
KEEKAEEPEEDKTGGQGAKTVEEVYMLSIESLAEVTARCIEQLHKVAELILHGQEEEKPAQDQARVLIKL
TTAMCNEVTSLSKKFTNSLTTVGSNKKAEVLNPMINSVFLEGSNSTTYVQDALQLLLPVLQVSHIRTSCL
KATAQPDCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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