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Report for CCDS22412.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22412.1 Public Mus musculus 8 Klf2 23 108 98 CCDS HistoryNCBI Gene:16598Re-query CCDS DB by CCDS ID:22412.1Re-query CCDS DB by GeneID:16598See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22412.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067912.7 ENSMUSP00000064823.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067912.7Link to Ensembl Protein Viewer:ENSMUSP00000064823.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000067912Re-query CCDS DB by Protein ID:ENSMUSP00000064823
Original member Current member NCBI NM_008452.2 NP_032478.2 Accepted alive Link to Nucleotide Sequence:NM_008452.2Link to Protein Sequence:NP_032478.2Re-query CCDS DB by Nucleotide ID:NM_008452Re-query CCDS DB by Protein ID:NP_032478Link to BLAST:NP_032478.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032478.2 354 Q60843 354 100% 0 0

Chromosomal Locations for CCDS 22412.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 72319078 72319149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72319426 72320242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72320744 72320919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGGCGCTCAGCGAGCCTATCTTGCCGTCCTTTGCCACTTTCGCCAGCCCGTGCGAGCGCGGCCTCCAGG
AGCGCTGGCCGCGAAATGAACCCGAGGCGGGCGGCACGGATGAGGACCTAAACAACGTGTTGGACTTCAT
CCTCTCCATGGGATTGGACGGTCTGGGCGCCGAAAATCCTCCCGAGCCCCCGCCGCAGCCCCCGCCGCCT
GCCTTCTACTACCCGGAGCCGGGTGCTCCGCCGCCCTACAGCATCCCCGCGGCCAGCCTGGGAACAGAGC
TGCTGCGCCCCGACCTGGACCCGCCTCAGGGGCCGGCTCTGCACGGCCGCTTCCTCCTCGCGCCTCCCGG
GCGGCTAGTGAAGGCCGAGCCCCCCGAGGTGGACGGCGGCGGCTACGGCTGCGCTCCGGGCCTGGCCCAC
GGACCGCGCGGGCTGAAGCTCGAGGGCGCCCCAGGAGCGACAGGTGCATGCATGCGGGGTCCCGCCGGCC
GCCCCCCGCCGCCCCCGGACACGCCGCCGCTCAGCCCCGACGGCCCCCTGCGCATCCCGGCGTCCGGTCC
CCGCAACCCGTTCCCGCCGCCCTTCGGTCCCGGCCCCAGCTTCGGCGGTCCCGGCCCCGCGTTGCACTAC
GGGCCTCCCGCGCCTGGCGCCTTCGGTCTTTTCGAGGACGCGGCGGCAGCGGCGGCGGCGCTGGGCTTGG
CTCCACCTGCCACGCGCGGTCTCCTCACGCCGCCCTCGTCCCCGCTGGAGCTGCTGGAGGCCAAGCCCAA
ACGCGGCCGCCGCTCCTGGCCCCGCAAGCGCGCCGCCACACATACTTGCAGCTACACCAACTGCGGCAAG
ACCTACACCAAGAGCTCGCACCTAAAGGCGCATCTGCGTACACACACAGGTGAGAAGCCTTATCATTGCA
ACTGGGAAGGATGCGGCTGGAAGTTCGCGCGCTCTGACGAGCTTACCCGCCACTACCGAAAGCACACAGG
TCACAGACCCTTTCAGTGCCACTTGTGCGACCGGGCCTTCTCCAGGTCCGACCACCTGGCCTTGCACATG
AAGCGACACATGTAG

Translation (354 aa):
MALSEPILPSFATFASPCERGLQERWPRNEPEAGGTDEDLNNVLDFILSMGLDGLGAENPPEPPPQPPPP
AFYYPEPGAPPPYSIPAASLGTELLRPDLDPPQGPALHGRFLLAPPGRLVKAEPPEVDGGGYGCAPGLAH
GPRGLKLEGAPGATGACMRGPAGRPPPPPDTPPLSPDGPLRIPASGPRNPFPPPFGPGPSFGGPGPALHY
GPPAPGAFGLFEDAAAAAAALGLAPPATRGLLTPPSSPLELLEAKPKRGRRSWPRKRAATHTCSYTNCGK
TYTKSSHLKAHLRTHTGEKPYHCNWEGCGWKFARSDELTRHYRKHTGHRPFQCHLCDRAFSRSDHLALHM
KRHM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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