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Report for CCDS22465.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22465.1 Public Mus musculus 8 Il27ra 23 108 98 CCDS HistoryNCBI Gene:50931Re-query CCDS DB by CCDS ID:22465.1Re-query CCDS DB by GeneID:50931See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22465.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005601.8 ENSMUSP00000005601.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005601.8Link to Ensembl Protein Viewer:ENSMUSP00000005601.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000005601Re-query CCDS DB by Protein ID:ENSMUSP00000005601
Original member NCBI NM_016671.3 NP_057880.2 Updated not alive Link to Nucleotide Sequence:NM_016671.3Link to Protein Sequence:NP_057880.2Re-query CCDS DB by Nucleotide ID:NM_016671Re-query CCDS DB by Protein ID:NP_057880
Current member NCBI NM_016671.4 NP_057880.2 Accepted alive Link to Nucleotide Sequence:NM_016671.4Link to Protein Sequence:NP_057880.2Re-query CCDS DB by Nucleotide ID:NM_016671Re-query CCDS DB by Protein ID:NP_057880Link to BLAST:NP_057880.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057880.2 623 O70394 623 100% 0 0

Chromosomal Locations for CCDS 22465.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84031031 84031192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84031313 84031421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84031519 84031609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84032017 84032142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84033951 84034109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84034192 84034293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84036085 84036273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84036363 84036546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84039296 84039369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84039478 84039634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84040674 84040831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84040932 84041089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84042087 84042204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84042450 84042534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1872 nt):
ATGAACCGGCTCCGGGTTGCACGCCTCACGCCGTTGGAGCTTCTGCTGTCGCTGATGTCGCTGCTGCTCG
GG
ACGCGGCCCCACGGCAGTCCAGGTCCACTGCAGTGCTACAGCGTCGGTCCCCTGGGAATCCTGAACTG
C
TCCTGGGAACCTTTGGGCGACCTGGAGACTCCACCTGTGCTGTATCACCAGAGTCAGAAATACCATCCC
AAT
AGAGTCTGGGAGGTGAAGGTGCCTTCCAAACAGAGTTGGGTGACCATTCCCCGGGAACAGTTCACCA
TG
GCTGACAAACTCCTCATCTGGGGGACACAAAAGGGACGGCCTCTGTGGTCCTCTGTCTCTGTGAACCT
G
GAGACCCAAATGAAGCCAGACACACCCCAGATCTTCTCTCAAGTGGATATTTCTGAGGAAGCAACCCTG
GAG
GCCACTGTGCAGTGGGCGCCGCCCGTGTGGCCACCGCAGAAAGTTCTCATCTGTCAGTTCCGGTACA
AG
GAATGCCAGGCTGAAACATGGACCCGGCTGGAGCCCCAGCTGAAGACAGATGGGCTGACTCCTGTTGA
G
ATGCAGAACCTGGAACCTGGCACCTGCTACCAGGTGTCTGGCCGCTGCCAGGTGGAGAACGGATATCCA
TGG
GGCGAGTGGAGTTCGCCCCTGTCCTTCCAGACGCCATTCTTAGATCCTGAAGATGTGTGGGTATCGG
GG
ACCGTCTGTGAAACTTCTGGCAAACGGGCAGCCCTGCTTGTCTGGAAGGACCCAAGACCTTGTGTGCA
G
GTGACTTACACAGTCTGGTTTGGGGCTGGAGATATTACTACAACTCAAGAAGAGGTCCCGTGCTGCAAG
TCC
CCTGTCCCTGCATGGATGGAGTGGGCTGTGGTCTCTCCTGGCAACAGCACCAGCTGGGTGCCTCCCA
CC
AACCTGTCTCTGGTGTGCTTGGCTCCAGAATCTGCCCCCTGTGACGTGGGAGTGAGCAGTGCTGATGG
G
AGCCCAGGGATAAAGGTGACCTGGAAACAAGGGACCAGGAAACCGTTGGAGTATGTGGTGGACTGGGCT
CAA
GATGGTGACAGCCTGGACAAGCTCAACTGGACCCGTCTCCCCCCTGGAAACCTCAGCACATTGTTAC
CA
GGGGAGTTCAAAGGAGGGGTCCCCTATCGAATTACAGTGACTGCAGTATATTCTGGAGGATTAGCTGC
T
GCACCCTCAGTTTGGGGATTCAGAGAGGAGTTAGTACCCCTTGCTGGGCCAGCAGTTTGGCGACTTCCA
GAT
GACCCCCCAGGGACACCTGTTGTAGCCTGGGGAGAAGTACCAAGACACCAGCTCAGAGGCCAGGCTA
CT
CACTACACCTTCTGCATACAGAGCAGAGGCCTCTCCACTGTCTGCAGGAACGTGAGCAGTCAAACCCA
G
ACTGCCACTCTGCCCAACCTTCACTTGGGTTCCTTCAAGCTGTGGGTGACGGTGTCCACCGTTGCAGGA
CAG
GGCCCACCTGGTCCCAACCTTTCACTTCACCTACCAGATAATAGGATCAGGTGGAAAGCTCTGCCCT
GG
TTTCTGTCCCTGTGGGGTTTGCTTCTGATGGGCTGTGGCCTGAGCCTGGCCAGTACCAGGTGCCTACA
G
GCCAGGTGCTTACACTGGCGGCACAAGTTGCTTCCCCAGTGGATCTGGGAGAGGGTTCCTGATCCTGCC
AAC
AGCAATTCTGGGCAACCTTACATCAAGGAGGTGAGCCTGCCCCAACCGCCCAAGGACGGACCCATCC
TG
GAGGTGGAGGAAGTGGAGCTACAGCCTGTTGTGGAGTCCCCTAAAGCCTCTGCCCCAATTTACTCTGG
G
TATGAGAAACACTTCCTGCCCACACCAGAGGAGCTGGGCCTTCTAGTCTGA


Translation (623 aa):
MNRLRVARLTPLELLLSLMSLLLGTRPHGSPGPLQCYSVGPLGILNCSWEPLGDLETPPVLYHQSQKYHP
N
RVWEVKVPSKQSWVTIPREQFTMADKLLIWGTQKGRPLWSSVSVNLETQ
MKPDTPQIFSQVDISEEATL
E
ATVQWAPPVWPPQKVLICQFRYKECQAETWTR
LEPQLKTDGLTPVEMQNLEPGTCYQVSGRCQVENGYP
W
GEWSSPLSFQTPFL
DPEDVWVSGTVCETSGKRAALLVWKDPRPCVQVTYTVWFGAGDITTTQEEVPCCK
S
PVPAWMEWAVVSPGNSTSWVPPTNLSLVCL
APESAPCDVGVSSADGSPGIKVTWKQGTRKPLEYVVDWA
Q
DGDSLDKLNWTRLPPGNLSTLLP
GEFKGGVPYRITVTAVYSGGLAAAPSVWGFREELVPLAGPAVWRLP
D
DPPGTPVVAWGEVPRHQLRGQATHYTFCIQSRGLSTVCRN
VSSQTQTATLPNLHLGSFKLWVTVSTVAG
Q
GPPGPNLSLHLP
DNRIRWKALPWFLSLWGLLLMGCGLSLASTRCLQARCLHWRHKLLPQWIWERVPDPA
N
SNSGQPYIK
EVSLPQPPKDGPILEVEEVELQPVVESPKASAPIYSGYEKHFLPTPEELGLLV



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser