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Report for CCDS50160.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50160.1 Public Mus musculus 17 Adgre1 23 108 98 CCDS HistoryNCBI Gene:13733Re-query CCDS DB by CCDS ID:50160.1Re-query CCDS DB by GeneID:13733See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50160.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004850.7 ENSMUSP00000004850.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004850.7Link to Ensembl Protein Viewer:ENSMUSP00000004850.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000004850Re-query CCDS DB by Protein ID:ENSMUSP00000004850
Original member Current member EBI ENSMUST00000086763.12 ENSMUSP00000083971.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086763.12Link to Ensembl Protein Viewer:ENSMUSP00000083971.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000086763Re-query CCDS DB by Protein ID:ENSMUSP00000083971
Original member NCBI NM_001355722.1 NP_001342651.1 Updated not alive Link to Nucleotide Sequence:NM_001355722.1Link to Protein Sequence:NP_001342651.1Re-query CCDS DB by Nucleotide ID:NM_001355722Re-query CCDS DB by Protein ID:NP_001342651
Current member NCBI NM_001355722.2 NP_001342651.1 Accepted alive Link to Nucleotide Sequence:NM_001355722.2Link to Protein Sequence:NP_001342651.1Re-query CCDS DB by Nucleotide ID:NM_001355722Re-query CCDS DB by Protein ID:NP_001342651Link to BLAST:NP_001342651.1
Original member NCBI NM_010130.4 NP_034260.1 Updated not alive Link to Nucleotide Sequence:NM_010130.4Link to Protein Sequence:NP_034260.1Re-query CCDS DB by Nucleotide ID:NM_010130Re-query CCDS DB by Protein ID:NP_034260
Current member NCBI NM_010130.5 NP_034260.1 Accepted alive Link to Nucleotide Sequence:NM_010130.5Link to Protein Sequence:NP_034260.1Re-query CCDS DB by Nucleotide ID:NM_010130Re-query CCDS DB by Protein ID:NP_034260Link to BLAST:NP_034260.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342651.1 931 Q61549 931 100% 0 0
NP_034260.1 931 Q61549 931 100% 0 0

Chromosomal Locations for CCDS 50160.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 57358726 57358756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57361672 57361734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57401905 57402051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57402501 57402656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57402742 57402861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57406834 57406980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57408346 57408495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57410718 57410858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57410945 57411091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57413673 57413761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57419322 57419405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57420347 57420524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57441255 57441371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57443898 57444082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57445009 57445179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57447830 57448024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57449866 57450101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57460693 57460759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57475829 57475920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57478772 57478940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57480920 57481024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57483115 57483120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2796 nt):
ATGTGGGGCTTTTGGCTGCTCCTCTTCTGGGGCTTCAGTGGGATGTACAGATGGGGGATGACCACACTTC
CCACCCTGGGACAAACACTTGGTGGTGTGAATGAGTGTCAAGATACTACCACTTGCCCAGCTTATGCCAC
CTGCACTGACACCACAGACAGTTATTACTGCACCTGTAAACGAGGCTTCCTGTCCAGCAATGGACAAACC
AACTTTCAAGGCCCAGGAGTGGAATGTCAAGATGTTAACGAATGTCTTCAAAGTGACTCACCTTGTGGTC
CTAACTCAGTCTGCACCAATATCCTGGGGAGAGCCAAGTGCAGCTGTCTTAGAGGCTTCTCTTCTTCCAC
TGGGAAAGACTGGATTCTGGGAAGTTTGGATAATTTTCTCTGCGCAGATGTTGATGAGTGTCTGACAATT
GGGATCTGCCCTAAGTATTCCAACTGCTCTAACTCTGTGGGAAGCTACAGCTGTACCTGTCAACCAGGCT
TTGTCTTGAATGGCTCCATTTGTGAAGATGAAGATGAATGTGTGACTCGAGACGTTTGCCCTGAACATGC
AACCTGCCACAACACTCTCGGAAGCTATTATTGTACGTGCAACTCAGGACTTGAATCTAGTGGAGGAGGG
CCAATGTTCCAGGGCCTGGACGAATCCTGTGAAGATGTGGATGAGTGCTCCAGGAATTCAACTCTCTGTG
GTCCCACCTTCATTTGCATCAACACTCTGGGATCCTACAGCTGCTCATGCCCAGCTGGATTCTCTTTGCC
AACTTTTCAGATCCTTGGCCATCCGGCAGATGGGAATTGTACAGATATCGATGAGTGTGATGACACATGT
CCTTTGAATTCATCATGTACCAACACTATTGGGAGCTACTTCTGCACTTGCCACCCTGGCTTTGCATCTA
GCAATGGACAGCTGAATTTCAAAGACCTAGAGGTGACATGTGAAGATATTGATGAGTGCACCCAAGATCC
ATTACAATGTGGACTGAATTCTGTCTGCACCAATGTACCAGGCTCCTACATCTGTGGCTGCCTCCCTGAC
TTTCAAATGGATCCAGAAGGCTCCCAAGGATATGGAAACTTCAACTGCAAAAGGATCCTCTTCAAGTGTA
AGGAAGACTTGATACTCCAAAGTGAGCAGATACAGCAATGCCAAGCAGTGCAGGGCAGGGATCTTGGTTA
TGCTTCCTTCTGTACACTTGTGAATGCTACCTTCACAATCCTTGATAATACCTGTGAGAACAAAAGTGCC
CCAGTGTCCTTACAGAGTGCAGCTACAAGTGTCTCCCTCGTGCTGGAGCAAGCGACCACATGGTTTGAGC
TCAGCAAGGAGGAGACATCCACTCTGGGCACCATCTTGCTGGAGACTGTGGAAAGCACCATGTTAGCTGC
TCTTCTGATACCCTCTGGGAATGCCAGTCAGATGATTCAGACGGAGTACCTAGACATCGAAAGCAAAGTC
ATCAATGAAGAGTGCAAGGAGAATGAGTCCATTAACTTGGCAGCCAGAGGGGACAAGATGAATGTTGGCT
GTTTCATAATCAAAGAATCAGTATCTACAGGGGCCCCAGGAGTGGCTTTTGTCTCATTTGCACACATGGA
ATCAGTTTTAAATGAACGCTTCTTTGAAGATGGCCAGTCCTTCCGGAAGCTGAGGATGAATTCCCGTGTT
GTTGGTGGCACTGTGACCGGGGAGAAGAAGGAGGACTTCTCCAAGCCTATTATCTATACCCTCCAGCACA
TCCAGCCAAAGCAGAAGTCTGAGAGGCCTATCTGTGTCTCCTGGAACACTGATGTGGAGGATGGGAGATG
GACACCCTCGGGCTGTGAGATTGTGGAAGCATCCGAGACACACACAGTCTGCAGCTGTAACCGGATGGCA
AACTTGGCTATCATCATGGCTTCTGGGGAGCTTACGATGGAATTCTCCTTGTATATCATCAGCCATGTGG
GTACAGTCATCTCCCTGGTATGTCTTGCCTTGGCCATAGCCACCTTCCTGCTGTGTCGTGCTGTTCAGAA
CCACAATACCTACATGCACCTGCATCTTTGTGTGTGTCTCTTCTTGGCCAAGATTCTCTTCCTCACCGGT
ATAGACAAGACTGACAACCAGACGGCTTGTGCCATCATTGCGGGATTCCTACACTATCTTTTCCTCGCCT
GCTTCTTCTGGATGCTAGTGGAGGCAGTGATGCTCTTCCTGATGGTGAGAAACCTGAAGGTGGTGAATTA
TTTCAGCTCTCGCAACATCAAGATGCTGCACCTCTGTGCCTTTGGCTATGGGCTTCCAGTCCTGGTGGTC
ATAATCTCTGCTTCTGTACAGCCACGGGGCTATGGGATGCATAATCGCTGCTGGTTGAATACAGAGACGG
GGTTTATCTGGAGTTTCCTGGGGCCTGTCTGCATGATCATCACGATAAACTCTGTCCTCCTTGCCTGGAC
ACTGTGGGTTCTGAGGCAGAAGCTCTGCAGTGTCAGCTCAGAAGTCTCTAAACTCAAGGACACGAGGTTG
CTGACCTTCAAGGCCATTGCCCAGATTTTCATCTTGGGCTGCTCCTGGGTGCTGGGCATTTTCCAGATTG
GCCCCTTGGCAAGCATCATGGCATACCTGTTCACCATTATCAACAGTCTGCAGGGGGCTTTCATCTTCCT
CATTCACTGTCTGCTCAACCGTCAGGTACGGGATGAATATAAGAAACTCCTCACCAGGAAGACTGACCTT
AGCTCCCATTCCCAGACTTCTGGGATTTTACTGTCATCTATGCCATCCACTTCCAAGATGGGTTAA

Translation (931 aa):
MWGFWLLLFWGFSGMYRWGMTTLPTLGQTLGGVNECQDTTTCPAYATCTDTTDSYYCTCKRGFLSSNGQT
NFQGPGVECQDVNECLQSDSPCGPNSVCTNILGRAKCSCLRGFSSSTGKDWILGSLDNFLCADVDECLTI
GICPKYSNCSNSVGSYSCTCQPGFVLNGSICEDEDECVTRDVCPEHATCHNTLGSYYCTCNSGLESSGGG
PMFQGLDESCEDVDECSRNSTLCGPTFICINTLGSYSCSCPAGFSLPTFQILGHPADGNCTDIDECDDTC
PLNSSCTNTIGSYFCTCHPGFASSNGQLNFKDLEVTCEDIDECTQDPLQCGLNSVCTNVPGSYICGCLPD
FQMDPEGSQGYGNFNCKRILFKCKEDLILQSEQIQQCQAVQGRDLGYASFCTLVNATFTILDNTCENKSA
PVSLQSAATSVSLVLEQATTWFELSKEETSTLGTILLETVESTMLAALLIPSGNASQMIQTEYLDIESKV
INEECKENESINLAARGDKMNVGCFIIKESVSTGAPGVAFVSFAHMESVLNERFFEDGQSFRKLRMNSRV
VGGTVTGEKKEDFSKPIIYTLQHIQPKQKSERPICVSWNTDVEDGRWTPSGCEIVEASETHTVCSCNRMA
NLAIIMASGELTMEFSLYIISHVGTVISLVCLALAIATFLLCRAVQNHNTYMHLHLCVCLFLAKILFLTG
IDKTDNQTACAIIAGFLHYLFLACFFWMLVEAVMLFLMVRNLKVVNYFSSRNIKMLHLCAFGYGLPVLVV
IISASVQPRGYGMHNRCWLNTETGFIWSFLGPVCMIITINSVLLAWTLWVLRQKLCSVSSEVSKLKDTRL
LTFKAIAQIFILGCSWVLGIFQIGPLASIMAYLFTIINSLQGAFIFLIHCLLNRQVRDEYKKLLTRKTDL
SSHSQTSGILLSSMPSTSKMG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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