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Report for CCDS29848.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29848.1 Public Mus musculus 19 Scd2 23 108 98 CCDS HistoryNCBI Gene:20250Re-query CCDS DB by CCDS ID:29848.1Re-query CCDS DB by GeneID:20250See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29848.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026221.6 ENSMUSP00000026221.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026221.6Link to Ensembl Protein Viewer:ENSMUSP00000026221.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000026221Re-query CCDS DB by Protein ID:ENSMUSP00000026221
Original member Current member NCBI NM_009128.2 NP_033154.2 Accepted alive Link to Nucleotide Sequence:NM_009128.2Link to Protein Sequence:NP_033154.2Re-query CCDS DB by Nucleotide ID:NM_009128Re-query CCDS DB by Protein ID:NP_033154Link to BLAST:NP_033154.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033154.2 358 P13011 358 100% 0 0

Chromosomal Locations for CCDS 29848.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 44294388 44294411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44294904 44295186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44298040 44298170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44299609 44299814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44301212 44301444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44303001 44303200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGCCGGCCCACATACTGCAAGAGATCTCTGGCGCTTACTCAGCCACCACCACAATCACAGCGCCACCTT
CT
GGGGGACAGCAGAATGGAGGCGAGAAGTTTGAAAAGAGTTCTCACCACTGGGGAGCAGATGTTCGCCC
T
GAACTAAAAGATGATCTATATGACCCCACCTATCAGGATGATGAGGGGCCCCCGCCCAAGCTGGAGTAC
GTC
TGGAGGAACATCATTCTCATGGCCCTGCTGCATTTGGGAGCCTTGTACGGGATCACACTGGTTCCCT
CC
TGCAAGCTCTACACCTGTCTCTTCGCGTATTTGTACTATGTAATCAGCGCCCTGGGCATCACAGCCGG
G
GCTCATCGCCTGTGGAGCCACAGAACATACAAGGCACGGCTGCCCCTGAGGCTCTTCCTCATCATTGCC
AAC
ACCATGGCGTTCCAGAATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAG
AA
ACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCG
C
AAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTG
ATG
TTCCAGAGGAGGTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCT
GG
TACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCT
C
AACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGC
TCT
CGGGAGAACATCTTGGTTTCCATGGGAGCTGTGGGCGAGGGCTTCCACAACTACCACCACGCCTTCC
CC
TACGACTACTCTGCCAGTGAGTACCGCTGGCACATCAACTTCACCACGTTCTTCATCGATTGCATGGC
T
CTCCTGGGCCTGGCTTACGACCGGAAGAGAGTGTCCAGGGCTGCTGTCTTGGCCAGGATTAAGAGAACT
GGA
GACGGAAGCTGCAAGAGCGGCTGA


Translation (358 aa):
MPAHILQEISGAYSATTTITAPPSGGQQNGGEKFEKSSHHWGADVRPELKDDLYDPTYQDDEGPPPKLEY
V
WRNIILMALLHLGALYGITLVPSCKLYTCLF
AYLYYVISALGITAGAHRLWSHRTYKARLPLRLFLIIA
N
TMAFQ
NDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGGKLDMSDLKAEKLV
M
FQR
RYYKPGLLLMCFVLPTLVPWYCWGETFVNSLCVSTFLRYAVVLNATWLVNSAAHLYGYRPYDKNIS
S
RENILVSMGAV
GEGFHNYHHAFPYDYSASEYRWHINFTTFFIDCMALLGLAYDRKRVSRAAVLARIKRT
G
DGSCKSG




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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